KEGG   PATHWAY: scap00020
Entry
scap00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus capitis subsp. capitis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scap00020  Citrate cycle (TCA cycle)
scap00020

Module
scap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scap00020]
scap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scap00020]
scap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scap00020]
scap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scap00020]
scap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scap00020]
Other DBs
GO: 0006099
Organism
Staphylococcus capitis subsp. capitis [GN:scap]
Gene
AYP1020_0976  citZ; Citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
AYP1020_0658  acnA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AYP1020_0975  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AYP1020_0724  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AYP1020_0723  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AYP1020_0420  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYP1020_0817  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
AYP1020_0598  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AYP1020_0599  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AYP1020_0557  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AYP1020_0556  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AYP1020_0473  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AYP1020_0474  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AYP1020_0472  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
AYP1020_1097  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AYP1020_0057  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AYP1020_1922  mqo2_2; putative malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
AYP1020_1782  mqo2_1; putative malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
AYP1020_1547  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
AYP1020_0438  cfiB_1; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
AYP1020_1063  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
AYP1020_0417  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AYP1020_0418  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
AYP1020_0419  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scap00010  Glycolysis / Gluconeogenesis
scap00061  Fatty acid biosynthesis
scap00071  Fatty acid degradation
scap00190  Oxidative phosphorylation
scap00220  Arginine biosynthesis
scap00250  Alanine, aspartate and glutamate metabolism
scap00280  Valine, leucine and isoleucine degradation
scap00470  D-Amino acid metabolism
scap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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