KEGG   PATHWAY: sdeo00240
Entry
sdeo00240                   Pathway                                
Name
Pyrimidine metabolism - Shewanella decolorationis
Class
Metabolism; Nucleotide metabolism
Pathway map
sdeo00240  Pyrimidine metabolism
sdeo00240

Module
sdeo_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sdeo00240]
sdeo_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sdeo00240]
sdeo_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sdeo00240]
Other DBs
GO: 0006220 0006213
Organism
Shewanella decolorationis [GN:sdeo]
Gene
D0436_06305  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
D0436_06300  carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
D0436_16265  aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
D0436_17700  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
D0436_11475  pyrD; quinone-dependent dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
D0436_20280  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
D0436_10205  pyrF; orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
D0436_14980  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
D0436_12025  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
D0436_16660  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
D0436_19550  Maf-like protein [KO:K06287] [EC:3.6.1.-]
D0436_13900  DUF45 domain-containing protein [KO:K07043] [EC:3.6.1.-]
D0436_16655  CTP synthase [KO:K01937] [EC:6.3.4.2]
D0436_10180  cmk; (d)CMP kinase [KO:K00945] [EC:2.7.4.25]
D0436_11595  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
D0436_07305  bifunctional metallophosphatase/5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
D0436_13045  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA [KO:K11751] [EC:3.1.3.5 3.6.1.45]
D0436_16625  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
D0436_13590  HAD-IIA family hydrolase [KO:K02566] [EC:3.1.3.5]
D0436_02800  yjjG; pyrimidine 5'-nucleotidase [KO:K08723] [EC:3.1.3.-]
D0436_20390  nucleoside phosphorylase [KO:K00757] [EC:2.4.2.3]
D0436_19735  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
D0436_02330  pyrimidine/purine nucleoside phosphorylase [KO:K09913] [EC:2.4.2.1 2.4.2.2]
D0436_13575  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
D0436_17190  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
D0436_04760  rihA; pyrimidine-specific ribonucleoside hydrolase RihA [KO:K01250] [EC:3.2.2.-]
D0436_15335  ppnN; nucleotide 5'-monophosphate nucleosidase PpnN [KO:K06966] [EC:3.2.2.10 3.2.2.-]
D0436_13725  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
D0436_15795  nucleoside deaminase [KO:K03365] [EC:3.5.4.1 3.5.4.21]
D0436_13875  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
D0436_11905  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
D0436_11590  dcd; dCTP deaminase [KO:K01494] [EC:3.5.4.13]
D0436_10130  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
D0436_10125  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
D0436_09780  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
D0436_11575  tmk; dTMP kinase [KO:K00943] [EC:2.7.4.9]
D0436_20260  dut; dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
D0436_06735  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
D0436_08065  thymidine kinase [KO:K00857] [EC:2.7.1.21]
D0436_07460  thymidylate synthase [KO:K00560] [EC:2.1.1.45]
D0436_16105  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
Related
pathway
sdeo00030  Pentose phosphate pathway
sdeo00220  Arginine biosynthesis
sdeo00250  Alanine, aspartate and glutamate metabolism
sdeo00280  Valine, leucine and isoleucine degradation
sdeo00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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