KEGG   PATHWAY: sgb00020
Entry
sgb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces globisporus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgb00020  Citrate cycle (TCA cycle)
sgb00020

Module
sgb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgb00020]
sgb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgb00020]
sgb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgb00020]
sgb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgb00020]
sgb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgb00020]
Other DBs
GO: 0006099
Organism
Streptomyces globisporus [GN:sgb]
Gene
WQO_11395  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WQO_20330  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
WQO_27050  citrate synthase [KO:K01647] [EC:2.3.3.1]
WQO_27055  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
WQO_27765  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WQO_29195  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WQO_24325  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
WQO_08670  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WQO_21040  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
WQO_21035  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
WQO_21965  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
WQO_21960  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WQO_22125  fumarate reductase [KO:K00239] [EC:1.3.5.1]
WQO_31650  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
WQO_22120  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WQO_31655  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WQO_22135  succinate dehydrogenase [KO:K00241]
WQO_31645  succinate dehydrogenase [KO:K00241]
WQO_22130  succinate dehydrogenase [KO:K00242]
WQO_23040  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
WQO_22990  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
WQO_22020  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WQO_22695  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
WQO_09695  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WQO_08685  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WQO_00140  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
WQO_00145  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
WQO_00150  dehydrogenase [KO:K00627] [EC:2.3.1.12]
WQO_08675  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgb00010  Glycolysis / Gluconeogenesis
sgb00053  Ascorbate and aldarate metabolism
sgb00061  Fatty acid biosynthesis
sgb00071  Fatty acid degradation
sgb00190  Oxidative phosphorylation
sgb00220  Arginine biosynthesis
sgb00250  Alanine, aspartate and glutamate metabolism
sgb00280  Valine, leucine and isoleucine degradation
sgb00350  Tyrosine metabolism
sgb00470  D-Amino acid metabolism
sgb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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