KEGG   PATHWAY: sjn00020
Entry
sjn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces janthinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sjn00020  Citrate cycle (TCA cycle)
sjn00020

Module
sjn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sjn00020]
sjn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sjn00020]
sjn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sjn00020]
sjn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sjn00020]
sjn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sjn00020]
Other DBs
GO: 0006099
Organism
Streptomyces janthinus [GN:sjn]
Gene
RI060_23915  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
RI060_27225  citrate synthase [KO:K01647] [EC:2.3.3.1]
RI060_10435  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
RI060_10440  citrate synthase [KO:K01647] [EC:2.3.3.1]
RI060_09730  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RI060_05115  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RI060_13320  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
RI060_30995  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RI060_08925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RI060_16625  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RI060_16630  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RI060_15675  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RI060_06765  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RI060_15680  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RI060_06770  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RI060_14235  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RI060_15405  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RI060_04105  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RI060_14240  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RI060_15410  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RI060_04100  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RI060_15395  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RI060_04110  succinate dehydrogenase [KO:K00241]
RI060_15400  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
RI060_14415  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RI060_14430  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RI060_15600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RI060_14850  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
RI060_29760  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
RI060_30980  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
RI060_30990  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
RI060_40050  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sjn00010  Glycolysis / Gluconeogenesis
sjn00053  Ascorbate and aldarate metabolism
sjn00061  Fatty acid biosynthesis
sjn00071  Fatty acid degradation
sjn00190  Oxidative phosphorylation
sjn00220  Arginine biosynthesis
sjn00250  Alanine, aspartate and glutamate metabolism
sjn00280  Valine, leucine and isoleucine degradation
sjn00350  Tyrosine metabolism
sjn00470  D-Amino acid metabolism
sjn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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