KEGG   PATHWAY: smx00020
Entry
smx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sinorhizobium meliloti SM11
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smx00020  Citrate cycle (TCA cycle)
smx00020

Module
smx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smx00020]
smx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smx00020]
smx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smx00020]
smx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smx00020]
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smx00020]
Other DBs
GO: 0006099
Organism
Sinorhizobium meliloti SM11 [GN:smx]
Gene
SM11_chr2058  gltA; citrate synthase protein [KO:K01647] [EC:2.3.3.1]
SM11_chr3357  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SM11_chr1606  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SM11_chr3232  sucA; 2-oxoglutarate dehydrogenase E1 subunit [KO:K00164] [EC:1.2.4.2]
SM11_pD0028  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SM11_chr3231  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SM11_chr3227  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SM11_chr2118  lpdA1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SM11_chr3107  lpdA3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SM11_chr3233  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SM11_chr3234  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SM11_chr3249  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SM11_chr3248  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SM11_chr3251  sdhC; succinate dehydrogenase cytochrome B-556 subunit transmembrane protein [KO:K00241]
SM11_chr3250  sdhD; succinate dehydrogenase membrane anchor subunit protein [KO:K00242]
SM11_chr1540  fumC; fumarate hydratase C [KO:K01679] [EC:4.2.1.2]
SM11_chr3235  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SM11_chr3404  pyc; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SM11_chr3509  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SM11_chr2123  pdhAa; PdhA, alpha subunit [KO:K00161] [EC:1.2.4.1]
SM11_chr2122  pdhAb; PdhA, beta subunit [KO:K00162] [EC:1.2.4.1]
SM11_chr2121  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smx00010  Glycolysis / Gluconeogenesis
smx00053  Ascorbate and aldarate metabolism
smx00061  Fatty acid biosynthesis
smx00071  Fatty acid degradation
smx00190  Oxidative phosphorylation
smx00220  Arginine biosynthesis
smx00250  Alanine, aspartate and glutamate metabolism
smx00280  Valine, leucine and isoleucine degradation
smx00350  Tyrosine metabolism
smx00470  D-Amino acid metabolism
smx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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