KEGG   PATHWAY: soq00970
Entry
soq00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Spirosoma oryzicola
Class
Genetic Information Processing; Translation
Pathway map
soq00970  Aminoacyl-tRNA biosynthesis
soq00970

Organism
Spirosoma oryzicola [GN:soq]
Gene
LQ777_21270  gltX; glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
LQ777_03490  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
LQ777_23460  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
LQ777_00440  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
LQ777_15725  glutamine--tRNA ligase/YqeY domain fusion protein [KO:K01886] [EC:6.1.1.18]
LQ777_12935  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
LQ777_20305  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
LQ777_08550  asnS; asparagine--tRNA ligase [KO:K01893] [EC:6.1.1.22]
LQ777_13875  glycine--tRNA ligase [KO:K01880] [EC:6.1.1.14]
LQ777_12520  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
LQ777_00585  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
LQ777_13445  aminotransferase class V-fold PLP-dependent enzyme [KO:K01042] [EC:2.9.1.1]
LQ777_00245  cysS; cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
LQ777_12750  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
LQ777_18275  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
LQ777_24995  hypothetical protein [KO:K00604] [EC:2.1.2.9]
LQ777_18995  formyl transferase [KO:K00604] [EC:2.1.2.9]
LQ777_00135  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
LQ777_09520  leuS; leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
LQ777_19860  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
LQ777_21140  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
LQ777_19880  argS; arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
LQ777_15625  proS; proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
LQ777_09460  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
LQ777_16805  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
LQ777_18230  pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
LQ777_08310  tyrS; tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
LQ777_07700  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
soq00250  Alanine, aspartate and glutamate metabolism
soq00260  Glycine, serine and threonine metabolism
soq00270  Cysteine and methionine metabolism
soq00290  Valine, leucine and isoleucine biosynthesis
soq00300  Lysine biosynthesis
soq00330  Arginine and proline metabolism
soq00340  Histidine metabolism
soq00380  Tryptophan metabolism
soq00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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