KEGG   PATHWAY: spsr00020
Entry
spsr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella psychromarinicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spsr00020  Citrate cycle (TCA cycle)
spsr00020

Module
spsr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spsr00020]
spsr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spsr00020]
spsr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spsr00020]
spsr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spsr00020]
spsr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spsr00020]
Other DBs
GO: 0006099
Organism
Shewanella psychromarinicola [GN:spsr]
Gene
EGC80_14235  citrate synthase [KO:K01647] [EC:2.3.3.1]
EGC80_03405  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EGC80_06100  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EGC80_14695  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EGC80_11795  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
EGC80_14260  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EGC80_14265  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EGC80_06080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EGC80_14275  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EGC80_14270  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EGC80_14250  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EGC80_14255  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EGC80_14240  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
EGC80_14245  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EGC80_03465  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
EGC80_03470  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
EGC80_02055  fumarate reductase cytochrome b-556 subunit [KO:K25996]
EGC80_03460  fumarate reductase cytochrome b subunit [KO:K25996]
EGC80_06710  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
EGC80_15230  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EGC80_03410  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
EGC80_00810  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EGC80_05535  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EGC80_06070  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EGC80_06075  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spsr00010  Glycolysis / Gluconeogenesis
spsr00061  Fatty acid biosynthesis
spsr00071  Fatty acid degradation
spsr00190  Oxidative phosphorylation
spsr00220  Arginine biosynthesis
spsr00250  Alanine, aspartate and glutamate metabolism
spsr00280  Valine, leucine and isoleucine degradation
spsr00350  Tyrosine metabolism
spsr00470  D-Amino acid metabolism
spsr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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