KEGG   PATHWAY: stes00020
Entry
stes00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stenotrophomonas sp. ASS1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stes00020  Citrate cycle (TCA cycle)
stes00020

Module
stes_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stes00020]
stes_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stes00020]
stes_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stes00020]
stes_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stes00020]
Other DBs
GO: 0006099
Organism
Stenotrophomonas sp. ASS1 [GN:stes]
Gene
MG068_16770  citrate synthase [KO:K01647] [EC:2.3.3.1]
MG068_15630  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
MG068_09795  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MG068_09810  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MG068_19060  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MG068_04145  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MG068_13620  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MG068_13625  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MG068_13630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MG068_18210  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MG068_16330  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MG068_16335  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MG068_01780  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
MG068_07865  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MG068_07870  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MG068_07855  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MG068_07860  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MG068_13750  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MG068_13595  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MG068_03945  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MG068_05380  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MG068_01850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MG068_07575  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MG068_18215  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stes00010  Glycolysis / Gluconeogenesis
stes00053  Ascorbate and aldarate metabolism
stes00061  Fatty acid biosynthesis
stes00071  Fatty acid degradation
stes00190  Oxidative phosphorylation
stes00220  Arginine biosynthesis
stes00250  Alanine, aspartate and glutamate metabolism
stes00280  Valine, leucine and isoleucine degradation
stes00350  Tyrosine metabolism
stes00470  D-Amino acid metabolism
stes00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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