KEGG   PATHWAY: stha00020
Entry
stha00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingobacterium thalpophilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stha00020  Citrate cycle (TCA cycle)
stha00020

Module
stha_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stha00020]
stha_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stha00020]
stha_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stha00020]
stha_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stha00020]
stha_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stha00020]
Other DBs
GO: 0006099
Organism
Sphingobacterium thalpophilum [GN:stha]
Gene
NCTC11429_02292  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
NCTC11429_04835  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NCTC11429_04733  acn; Aconitate hydratase precursor [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NCTC11429_04187  citB; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NCTC11429_04734  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC11429_03464  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC11429_04612  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC11429_02530  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC11429_02529  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC11429_02652  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC11429_00774  lpdG; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC11429_00777  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC11429_00649  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC11429_00782  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC11429_00644  scpC; Propionyl-CoA:succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
NCTC11429_00991  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC11429_00992  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC11429_00125  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
NCTC11429_00990  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
NCTC11429_02020  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC11429_02519  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC11429_03453  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC11429_04730  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC11429_01070  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
NCTC11429_01600  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NCTC11429_01069  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stha00010  Glycolysis / Gluconeogenesis
stha00053  Ascorbate and aldarate metabolism
stha00061  Fatty acid biosynthesis
stha00071  Fatty acid degradation
stha00190  Oxidative phosphorylation
stha00220  Arginine biosynthesis
stha00250  Alanine, aspartate and glutamate metabolism
stha00280  Valine, leucine and isoleucine degradation
stha00350  Tyrosine metabolism
stha00470  D-Amino acid metabolism
stha00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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