KEGG   PATHWAY: sty00020
Entry
sty00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhi CT18
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sty00020  Citrate cycle (TCA cycle)
sty00020

Module
sty_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sty00020]
sty_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sty00020]
sty_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sty00020]
sty_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sty00020]
sty_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sty00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhi CT18 [GN:sty]
Gene
STY0773  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
STY0401  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
STY1339  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
STY0181  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
STY1278  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STY0779  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
STY0780  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
STY0177  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
STY0782  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
STY0781  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
STY0777  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STY0778  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
STY0775  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
STY0776  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
STY4703  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
STY4702  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
STY4701  frdC; fumarate reductase complex subunit C; membrane anchor polypeptide [KO:K00246]
STY4700  frdD; fumarate reductase complex subunit D; membrane anchor polypeptide [KO:K00247]
STY4499  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
STY1654  fumA; Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
STY1653  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
STY1732  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
STY3539  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STY4296  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
STY0175  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
STY0176  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
STY1419  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sty00010  Glycolysis / Gluconeogenesis
sty00053  Ascorbate and aldarate metabolism
sty00061  Fatty acid biosynthesis
sty00071  Fatty acid degradation
sty00190  Oxidative phosphorylation
sty00220  Arginine biosynthesis
sty00250  Alanine, aspartate and glutamate metabolism
sty00280  Valine, leucine and isoleucine degradation
sty00350  Tyrosine metabolism
sty00470  D-Amino acid metabolism
sty00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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