KEGG   PATHWAY: syb00230
Entry
syb00230                    Pathway                                
Name
Purine metabolism - Sphingobium sp. YBL2
Class
Metabolism; Nucleotide metabolism
Pathway map
syb00230  Purine metabolism
syb00230

Module
syb_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:syb00230]
syb_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:syb00230]
syb_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:syb00230]
syb_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:syb00230]
syb_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:syb00230]
syb_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:syb00230]
Other DBs
GO: 0006163 0042278
Organism
Sphingobium sp. YBL2 [GN:syb]
Gene
TZ53_22105  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
TZ53_19435  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
TZ53_10200  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
TZ53_19270  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
TZ53_03550  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
TZ53_01545  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
TZ53_03105  purT; phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
TZ53_03100  phosphoribosylformylglycinamidine synthase [KO:K23269] [EC:6.3.5.3]
TZ53_16430  phosphoribosylformylglycinamidine synthase [KO:K23264] [EC:6.3.5.3]
TZ53_16425  phosphoribosylformylglycinamidine synthase [KO:K23265] [EC:6.3.5.3 3.5.1.2]
TZ53_01550  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
TZ53_20245  phosphoribosylaminoimidazole carboxylase [KO:K01589] [EC:6.3.4.18]
TZ53_20250  purE; N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
TZ53_16440  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
TZ53_20760  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
TZ53_10305  purH; phosphoribosylaminoimidazolecarboxamide formyltransferase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
TZ53_02340  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
TZ53_20880  stationary phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
TZ53_09955  polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
TZ53_14360  inosine-5-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
TZ53_14375  ndk; phosphodiesterase [KO:K00940] [EC:2.7.4.6]
TZ53_22165  nucleoside-triphosphate diphosphatase [KO:K01519] [EC:3.6.1.66]
TZ53_03190  xanthine dehydrogenase [KO:K11177] [EC:1.17.1.4]
TZ53_06230  dehydrogenase [KO:K11177] [EC:1.17.1.4]
TZ53_03195  molybdopterin dehydrogenase [KO:K11178] [EC:1.17.1.4]
TZ53_06225  molybdopterin dehydrogenase [KO:K11178] [EC:1.17.1.4]
TZ53_03200  ferredoxin [KO:K13483]
TZ53_10820  guaA; GMP synthase [KO:K01951] [EC:6.3.5.2]
TZ53_11665  glutamine amidotransferase [KO:K01951] [EC:6.3.5.2]
TZ53_15505  guanylate kinase [KO:K00942] [EC:2.7.4.8]
TZ53_11425  ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
TZ53_11435  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
TZ53_08310  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
TZ53_00880  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
TZ53_12315  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
TZ53_12925  GTP pyrophosphokinase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
TZ53_11200  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
TZ53_01570  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
TZ53_14475  hypothetical protein [KO:K07816] [EC:2.7.6.5]
TZ53_06640  guanylate cyclase [KO:K01768] [EC:4.6.1.1]
TZ53_14205  adenylate cyclase [KO:K01768] [EC:4.6.1.1]
TZ53_10570  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
TZ53_18925  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
TZ53_11405  adenylate kinase [KO:K00939] [EC:2.7.4.3]
TZ53_18825  mazG; nucleoside triphosphate hydrolase [KO:K04765] [EC:3.6.1.9]
TZ53_06580  metallophosphoesterase [KO:K03651] [EC:3.1.4.53]
TZ53_07910  adenylyltransferase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
TZ53_07905  sulfate adenylyltransferase [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
syb00030  Pentose phosphate pathway
syb00220  Arginine biosynthesis
syb00250  Alanine, aspartate and glutamate metabolism
syb00260  Glycine, serine and threonine metabolism
syb00340  Histidine metabolism
syb00630  Glyoxylate and dicarboxylate metabolism
syb00730  Thiamine metabolism
syb00740  Riboflavin metabolism
syb00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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