KEGG   PATHWAY: tht00020
Entry
tht00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thalassotalea sp. HSM 43
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tht00020  Citrate cycle (TCA cycle)
tht00020

Module
tht_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tht00020]
tht_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tht00020]
tht_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tht00020]
tht_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tht00020]
tht_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tht00020]
Other DBs
GO: 0006099
Organism
Thalassotalea sp. HSM 43 [GN:tht]
Gene
E2K93_15160  citrate synthase [KO:K01647] [EC:2.3.3.1]
E2K93_16205  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
E2K93_10885  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E2K93_16980  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E2K93_01940  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
E2K93_15185  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E2K93_15190  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E2K93_10855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2K93_16350  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
E2K93_16345  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
E2K93_15270  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E2K93_15265  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E2K93_15175  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E2K93_15180  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E2K93_15165  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E2K93_15170  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E2K93_01105  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E2K93_10935  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E2K93_09615  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E2K93_10845  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E2K93_10850  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tht00010  Glycolysis / Gluconeogenesis
tht00053  Ascorbate and aldarate metabolism
tht00061  Fatty acid biosynthesis
tht00071  Fatty acid degradation
tht00190  Oxidative phosphorylation
tht00220  Arginine biosynthesis
tht00250  Alanine, aspartate and glutamate metabolism
tht00280  Valine, leucine and isoleucine degradation
tht00350  Tyrosine metabolism
tht00470  D-Amino acid metabolism
tht00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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