KEGG   PATHWAY: tmo00020
Entry
tmo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tistrella mobilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tmo00020  Citrate cycle (TCA cycle)
tmo00020

Module
tmo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tmo00020]
tmo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tmo00020]
tmo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tmo00020]
tmo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tmo00020]
Other DBs
GO: 0006099
Organism
Tistrella mobilis [GN:tmo]
Gene
TMO_0010  citA; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
TMO_3028  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
TMO_2414  prpC; 2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
TMO_3061  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
TMO_1136  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TMO_c0507  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TMO_3006  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
TMO_3005  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
TMO_1714  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TMO_3004  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TMO_b0193  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TMO_3007  sucD; Succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
TMO_3008  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
TMO_a0434  putative acetyl-CoA hydrolase/transferase family protein, putative succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
TMO_3275  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TMO_3276  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TMO_3273  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
TMO_3274  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
TMO_0081  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
TMO_3009  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TMO_b0341  aceE; Pyruvate dehydrogenase (acetyl-transferring) [KO:K00163] [EC:1.2.4.1]
TMO_1717  pdhA; 2-dehydro-3-deoxyphosphooctonate aldolase [KO:K00161] [EC:1.2.4.1]
TMO_1716  pdhB; Pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
TMO_1715  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
TMO_c0853  acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tmo00010  Glycolysis / Gluconeogenesis
tmo00053  Ascorbate and aldarate metabolism
tmo00061  Fatty acid biosynthesis
tmo00062  Fatty acid elongation
tmo00071  Fatty acid degradation
tmo00190  Oxidative phosphorylation
tmo00220  Arginine biosynthesis
tmo00250  Alanine, aspartate and glutamate metabolism
tmo00280  Valine, leucine and isoleucine degradation
tmo00350  Tyrosine metabolism
tmo00470  D-Amino acid metabolism
tmo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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