KEGG   PATHWAY: tom00630
Entry
tom00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Tateyamaria omphalii
Class
Metabolism; Carbohydrate metabolism
Pathway map
tom00630  Glyoxylate and dicarboxylate metabolism
tom00630

Module
tom_M00373  Ethylmalonyl pathway [PATH:tom00630]
tom_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:tom00630]
Other DBs
GO: 0046487 0043648
Organism
Tateyamaria omphalii [GN:tom]
Gene
BWR18_01910  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BWR18_08840  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
BWR18_09000  malate synthase G [KO:K01638] [EC:2.3.3.9]
BWR18_01005  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BWR18_08335  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BWR18_02180  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BWR18_03150  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWR18_07125  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWR18_11730  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWR18_16275  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWR18_17890  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWR18_11735  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BWR18_11555  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
BWR18_01125  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
BWR18_18665  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
BWR18_01110  protein meaA [KO:K14447] [EC:5.4.99.63]
BWR18_13585  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
BWR18_01040  hypothetical protein [KO:K14449] [EC:4.2.1.148]
BWR18_14535  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
BWR18_01025  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
BWR18_04220  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
BWR18_04185  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BWR18_04240  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BWR18_15185  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
BWR18_15180  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BWR18_15170  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BWR18_12840  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
BWR18_18935  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BWR18_09665  phosphatase [KO:K01091] [EC:3.1.3.18]
BWR18_12985  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BWR18_08865  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
BWR18_09895  septum site-determining protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWR18_19285  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWR18_19330  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWR18_02260  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BWR18_04615  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BWR18_04625  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BWR18_03015  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BWR18_13275  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BWR18_00930  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWR18_05370  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWR18_15580  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BWR18_03865  MOFRL family protein [KO:K11529] [EC:2.7.1.165]
BWR18_17175  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
BWR18_17170  fumarate hydratase [KO:K03780] [EC:4.2.1.32]
BWR18_14030  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BWR18_18260  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BWR18_20625  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
BWR18_04845  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
BWR18_20620  formate dehydrogenase [KO:K00124]
BWR18_15045  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
BWR18_18735  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
tom00010  Glycolysis / Gluconeogenesis
tom00020  Citrate cycle (TCA cycle)
tom00030  Pentose phosphate pathway
tom00053  Ascorbate and aldarate metabolism
tom00071  Fatty acid degradation
tom00230  Purine metabolism
tom00250  Alanine, aspartate and glutamate metabolism
tom00260  Glycine, serine and threonine metabolism
tom00620  Pyruvate metabolism
tom00710  Carbon fixation by Calvin cycle
tom00750  Vitamin B6 metabolism
tom00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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