KEGG   PATHWAY: tvd00020
Entry
tvd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thalassomonas viridans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tvd00020  Citrate cycle (TCA cycle)
tvd00020

Module
tvd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tvd00020]
tvd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tvd00020]
tvd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tvd00020]
tvd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tvd00020]
tvd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tvd00020]
Other DBs
GO: 0006099
Organism
Thalassomonas viridans [GN:tvd]
Gene
SG34_009230  citrate synthase [KO:K01647] [EC:2.3.3.1]
SG34_002805  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SG34_003760  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SG34_015530  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SG34_015535  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SG34_008435  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
SG34_009255  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SG34_009260  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SG34_020770  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SG34_003750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SG34_009270  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SG34_009265  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SG34_009245  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SG34_009250  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SG34_009235  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SG34_009240  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SG34_010775  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SG34_010930  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SG34_026975  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SG34_001360  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SG34_003740  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SG34_003745  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tvd00010  Glycolysis / Gluconeogenesis
tvd00053  Ascorbate and aldarate metabolism
tvd00061  Fatty acid biosynthesis
tvd00071  Fatty acid degradation
tvd00190  Oxidative phosphorylation
tvd00220  Arginine biosynthesis
tvd00250  Alanine, aspartate and glutamate metabolism
tvd00280  Valine, leucine and isoleucine degradation
tvd00350  Tyrosine metabolism
tvd00470  D-Amino acid metabolism
tvd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system