KEGG   PATHWAY: uli00020
Entry
uli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Urbifossiella limnaea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
uli00020  Citrate cycle (TCA cycle)
uli00020

Module
uli_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:uli00020]
uli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:uli00020]
uli_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:uli00020]
uli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:uli00020]
Other DBs
GO: 0006099
Organism
Urbifossiella limnaea [GN:uli]
Gene
ETAA1_22990  gltA; Citrate synthase [KO:K01659] [EC:2.3.3.5]
ETAA1_12290  acnA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ETAA1_02750  icdI; Isocitrate dehydrogenase [NADP] 1 [KO:K00031] [EC:1.1.1.42]
ETAA1_22470  icd; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
ETAA1_25680  hicd; Homoisocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
ETAA1_49800  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ETAA1_49810  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ETAA1_10220  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETAA1_49820  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETAA1_49020  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ETAA1_49010  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ETAA1_50200  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ETAA1_01980  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ETAA1_43380  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ETAA1_43370  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ETAA1_43390  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
ETAA1_52130  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ETAA1_31500  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ETAA1_47300  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
ETAA1_58170  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ETAA1_05890  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ETAA1_05110  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ETAA1_05880  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ETAA1_03370  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
ETAA1_03360  nifJ_1; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
ETAA1_62390  nifJ_2; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
uli00010  Glycolysis / Gluconeogenesis
uli00053  Ascorbate and aldarate metabolism
uli00061  Fatty acid biosynthesis
uli00071  Fatty acid degradation
uli00190  Oxidative phosphorylation
uli00220  Arginine biosynthesis
uli00250  Alanine, aspartate and glutamate metabolism
uli00280  Valine, leucine and isoleucine degradation
uli00350  Tyrosine metabolism
uli00470  D-Amino acid metabolism
uli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system