KEGG   PATHWAY: vag03430
Entry
vag03430                    Pathway                                
Name
Mismatch repair - Vibrio alginolyticus
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
vag03430  Mismatch repair
vag03430

Other DBs
GO: 0006298
Organism
Vibrio alginolyticus [GN:vag]
Gene
N646_1646  DNA mismatch repair protein [KO:K03555]
N646_1908  DNA mismatch repair protein [KO:K03572]
N646_2671  DNA mismatch repair protein [KO:K03573]
N646_2108  DNA helicase II [KO:K03657] [EC:5.6.2.4]
N646_0338  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
N646_2771  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
N646_2841  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
N646_2664  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
N646_1800  single-strand binding protein [KO:K03111]
N646_1412  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
N646_2190  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
N646_1282  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
N646_2879  DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
N646_1124  DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
N646_0984  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
N646_1964  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
N646_0440  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
N646_1401  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
N646_0599  hypothetical protein [KO:K02342] [EC:2.7.7.7]
N646_4287  hypothetical protein [KO:K02342] [EC:2.7.7.7]
N646_4470  hypothetical protein [KO:K02342] [EC:2.7.7.7]
N646_4188  hypothetical protein [KO:K02342] [EC:2.7.7.7]
N646_1738  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
N646_1537  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
N646_2945  DNA ligase [KO:K01972] [EC:6.5.1.2]
N646_1230  DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
N646_1836  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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