KEGG   PATHWAY: vca00020
Entry
vca00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio campbellii ATCC BAA-1116
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vca00020  Citrate cycle (TCA cycle)
vca00020

Module
vca_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vca00020]
vca_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vca00020]
vca_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vca00020]
vca_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vca00020]
vca_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vca00020]
Other DBs
GO: 0006099
Organism
Vibrio campbellii ATCC BAA-1116 [GN:vca]
Gene
M892_06275  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
M892_01435  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
M892_13885  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M892_05310  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M892_06250  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
M892_06245  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
M892_13780  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M892_12440  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M892_06235  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
M892_06240  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M892_06260  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M892_06255  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M892_06270  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
M892_06265  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
M892_11955  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
M892_11950  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
M892_11945  fumarate reductase [KO:K00246]
M892_11940  fumarate reductase [KO:K00247]
M892_03640  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M892_11790  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M892_08890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M892_09850  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M892_13770  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
M892_13775  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vca00010  Glycolysis / Gluconeogenesis
vca00061  Fatty acid biosynthesis
vca00071  Fatty acid degradation
vca00190  Oxidative phosphorylation
vca00220  Arginine biosynthesis
vca00250  Alanine, aspartate and glutamate metabolism
vca00280  Valine, leucine and isoleucine degradation
vca00350  Tyrosine metabolism
vca00470  D-Amino acid metabolism
vca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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