KEGG   PATHWAY: vko00010
Entry
vko00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Varanus komodoensis (Komodo dragon)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vko00010  Glycolysis / Gluconeogenesis
vko00010

Module
vko_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vko00010]
vko_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vko00010]
vko_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vko00010]
vko_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vko00010]
Other DBs
GO: 0006096 0006094
Organism
Varanus komodoensis (Komodo dragon) [GN:vko]
Gene
123016795  hexokinase-2 isoform X1 [KO:K00844] [EC:2.7.1.1]
123018408  HK1; hexokinase-1 [KO:K00844] [EC:2.7.1.1]
123018409  HKDC1; hexokinase HKDC1 [KO:K00844] [EC:2.7.1.1]
123027051  GCK; hexokinase-4 [KO:K12407] [EC:2.7.1.2]
123025338  GPI; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
123025584  PFKL; ATP-dependent 6-phosphofructokinase, liver type isoform X1 [KO:K00850] [EC:2.7.1.11]
123029763  ATP-dependent 6-phosphofructokinase, muscle type isoform X1 [KO:K00850] [EC:2.7.1.11]
123020912  ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
123031428  FBP2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
123031430  FBP1; fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
123032227  ALDOA; fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
123034796  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
123023648  ALDOC; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
123033226  TPI1; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
123033230  GAPDH; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
123019410  GAPDHS; glyceraldehyde-3-phosphate dehydrogenase, testis-specific isoform X1 [KO:K10705] [EC:1.2.1.12]
123027246  PGK1; phosphoglycerate kinase 1 [KO:K00927] [EC:2.7.2.3]
123027123  PGAM2; phosphoglycerate mutase 2 [KO:K01834] [EC:5.4.2.11]
123026766  PGAM1; phosphoglycerate mutase 1 [KO:K01834] [EC:5.4.2.11]
123033238  ENO2; gamma-enolase [KO:K01689] [EC:4.2.1.11]
123016692  ENO3; beta-enolase [KO:K01689] [EC:4.2.1.11]
123031011  ENO1; alpha-enolase isoform X1 [KO:K01689] [EC:4.2.1.11]
123024131  ENO4; enolase 4 [KO:K27394] [EC:4.2.1.11]
123027664  PKM; pyruvate kinase PKM isoform X1 [KO:K00873] [EC:2.7.1.40]
123032632  PKLR; pyruvate kinase PKLR isoform X1 [KO:K12406] [EC:2.7.1.40]
123028987  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
123034421  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
123036845  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
123019999  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
123034661  LDHB; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
123021276  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
123022759  alcohol dehydrogenase 1-like [KO:K13951] [EC:1.1.1.1]
123022958  alcohol dehydrogenase 1A [KO:K13951] [EC:1.1.1.1]
123022959  alcohol dehydrogenase 1B-like [KO:K13951] [EC:1.1.1.1]
123023022  alcohol dehydrogenase 1-like isoform X1 [KO:K13951] [EC:1.1.1.1]
123028157  alcohol dehydrogenase 1-like [KO:K13951] [EC:1.1.1.1]
123022679  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
123029337  AKR1A1; aldo-keto reductase family 1 member A1 [KO:K00002] [EC:1.1.1.2]
123032129  ALDH16A1; LOW QUALITY PROTEIN: aldehyde dehydrogenase family 16 member A1 [KO:K00128] [EC:1.2.1.3]
123023326  ALDH3A2; aldehyde dehydrogenase family 3 member A2 isoform X1 [KO:K00128] [EC:1.2.1.3]
123028757  ALDH2; aldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
123031275  ALDH7A1; alpha-aminoadipic semialdehyde dehydrogenase [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
123028003  ALDH9A1; 4-trimethylaminobutyraldehyde dehydrogenase [KO:K00149] [EC:1.2.1.47 1.2.1.3]
123027390  ALDH3B1; aldehyde dehydrogenase family 3 member B1 [KO:K00129] [EC:1.2.1.5]
123031932  ACSS2; acetyl-coenzyme A synthetase, cytoplasmic isoform X1 [KO:K01895] [EC:6.2.1.1]
123022821  ACSS1; acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
123026782  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1 [KO:K01895] [EC:6.2.1.1]
123022784  GALM; galactose mutarotase isoform X1 [KO:K01785] [EC:5.1.3.3]
123023468  PGM1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
123017089  PGM2; phosphoglucomutase-2 isoform X1 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
123017151  G6PC2; glucose-6-phosphatase 2 [KO:K01084] [EC:3.1.3.9]
123017363  glucose-6-phosphatase catalytic subunit 1-like [KO:K01084] [EC:3.1.3.9]
123017408  glucose-6-phosphatase catalytic subunit 1-like [KO:K01084] [EC:3.1.3.9]
123030546  G6PC3; glucose-6-phosphatase 3 [KO:K01084] [EC:3.1.3.9]
123033757  ADPGK; ADP-dependent glucokinase isoform X1 [KO:K08074] [EC:2.7.1.147]
123036382  BPGM; bisphosphoglycerate mutase isoform X1 [KO:K01837] [EC:5.4.2.4 5.4.2.11]
123018463  MINPP1; multiple inositol polyphosphate phosphatase 1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
123036242  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
123018653  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vko00020  Citrate cycle (TCA cycle)
vko00030  Pentose phosphate pathway
vko00500  Starch and sucrose metabolism
vko00620  Pyruvate metabolism
vko00640  Propanoate metabolism
KO pathway
ko00010   
LinkDB

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