KEGG   PATHWAY: xba00020
Entry
xba00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ahniella affigens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xba00020  Citrate cycle (TCA cycle)
xba00020

Module
xba_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:xba00020]
xba_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xba00020]
xba_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xba00020]
xba_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xba00020]
xba_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xba00020]
Other DBs
GO: 0006099
Organism
Ahniella affigens [GN:xba]
Gene
C7S18_03195  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C7S18_08920  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
C7S18_04100  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
C7S18_03885  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C7S18_11485  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
C7S18_01385  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C7S18_01390  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C7S18_14360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7S18_01395  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7S18_01030  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C7S18_01035  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C7S18_18360  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C7S18_18365  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C7S18_07315  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C7S18_07325  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C7S18_07305  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C7S18_07310  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C7S18_04845  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C7S18_04965  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C7S18_10655  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7S18_00880  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C7S18_16465  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C7S18_14365  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xba00010  Glycolysis / Gluconeogenesis
xba00053  Ascorbate and aldarate metabolism
xba00061  Fatty acid biosynthesis
xba00071  Fatty acid degradation
xba00190  Oxidative phosphorylation
xba00220  Arginine biosynthesis
xba00250  Alanine, aspartate and glutamate metabolism
xba00280  Valine, leucine and isoleucine degradation
xba00350  Tyrosine metabolism
xba00470  D-Amino acid metabolism
xba00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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