KEGG   PATHWAY: xbu00230
Entry
xbu00230                    Pathway                                
Name
Purine metabolism - Xenorhabdus budapestensis
Class
Metabolism; Nucleotide metabolism
Pathway map
xbu00230  Purine metabolism
xbu00230

Module
xbu_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:xbu00230]
xbu_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:xbu00230]
xbu_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:xbu00230]
xbu_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:xbu00230]
xbu_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:xbu00230]
Other DBs
GO: 0006163 0042278
Organism
Xenorhabdus budapestensis [GN:xbu]
Gene
HGO23_17040  nudF; ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
HGO23_00385  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
HGO23_03210  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
HGO23_13505  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
HGO23_10890  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
HGO23_07545  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
HGO23_01660  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
HGO23_08600  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
HGO23_06860  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
HGO23_08605  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
HGO23_15845  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
HGO23_15840  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
HGO23_08660  purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
HGO23_08455  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
HGO23_01665  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
HGO23_16005  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
HGO23_15950  bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
HGO23_16405  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
HGO23_15965  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
HGO23_03215  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
HGO23_13960  pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
HGO23_03120  nucleoside hydrolase [KO:K25589] [EC:3.2.2.2 3.2.2.3]
HGO23_05240  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
HGO23_08735  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
HGO23_06980  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
HGO23_03510  yjjX; inosine/xanthosine triphosphatase [KO:K01529] [EC:3.6.1.73]
HGO23_14305  XTP/dITP diphosphatase [KO:K01519] [EC:3.6.1.66]
HGO23_14130  gpt; xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
HGO23_08740  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
HGO23_15305  type 1 glutamine amidotransferase [KO:K01951] [EC:6.3.5.2]
HGO23_00985  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
HGO23_07985  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
HGO23_07990  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
HGO23_17615  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
HGO23_04900  dgt; dGTPase [KO:K01129] [EC:3.1.5.1]
HGO23_07705  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
HGO23_00995  spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
HGO23_08585  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
HGO23_18295  gppA; guanosine-5'-triphosphate,3'-diphosphate diphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
HGO23_04915  relA; GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
HGO23_18170  class I adenylate cyclase [KO:K05851] [EC:4.6.1.1]
HGO23_05000  adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
HGO23_17925  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
HGO23_09880  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
HGO23_10195  hypothetical protein [KO:K01488] [EC:3.5.4.4]
HGO23_16760  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
HGO23_03640  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
HGO23_15980  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
HGO23_04920  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
HGO23_10980  metallophosphoesterase [KO:K03651] [EC:3.1.4.53]
HGO23_17035  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
HGO23_16990  apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH [KO:K01525] [EC:3.6.1.41]
HGO23_16430  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
HGO23_16435  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
HGO23_16440  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
xbu00030  Pentose phosphate pathway
xbu00220  Arginine biosynthesis
xbu00250  Alanine, aspartate and glutamate metabolism
xbu00260  Glycine, serine and threonine metabolism
xbu00340  Histidine metabolism
xbu00630  Glyoxylate and dicarboxylate metabolism
xbu00730  Thiamine metabolism
xbu00740  Riboflavin metabolism
xbu00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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