KEGG   PATHWAY: xcb00020
Entry
xcb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas campestris pv. campestris 8004
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xcb00020  Citrate cycle (TCA cycle)
xcb00020

Module
xcb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xcb00020]
xcb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xcb00020]
xcb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xcb00020]
xcb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xcb00020]
Other DBs
GO: 0006099
Organism
Xanthomonas campestris pv. campestris 8004 [GN:xcb]
Gene
XC_0944  citrate synthase [KO:K01647] [EC:2.3.3.1]
XC_3214  citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
XC_2329  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
XC_2326  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
XC_3854  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
XC_3268  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
XC_2749  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
XC_2750  dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
XC_2751  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XC_3689  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XC_1064  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
XC_1063  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
XC_0550  CoA tranferase [KO:K18118] [EC:2.8.3.18]
XC_1983  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
XC_1985  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
XC_1981  succinate dehydrogenase membrane anchor subunit [KO:K00241]
XC_1982  succinate dehydrogenase membrane anchor subunit [KO:K00242]
XC_2822  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
XC_2742  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
XC_3307  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XC_0588  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
XC_3691  dihydrolipoamide acetyltranferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xcb00010  Glycolysis / Gluconeogenesis
xcb00053  Ascorbate and aldarate metabolism
xcb00061  Fatty acid biosynthesis
xcb00071  Fatty acid degradation
xcb00190  Oxidative phosphorylation
xcb00220  Arginine biosynthesis
xcb00250  Alanine, aspartate and glutamate metabolism
xcb00280  Valine, leucine and isoleucine degradation
xcb00350  Tyrosine metabolism
xcb00470  D-Amino acid metabolism
xcb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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