KEGG   PATHWAY: xcn00020
Entry
xcn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas citri pv. citri NT17
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xcn00020  Citrate cycle (TCA cycle)
xcn00020

Module
xcn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xcn00020]
xcn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xcn00020]
xcn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xcn00020]
xcn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xcn00020]
Other DBs
GO: 0006099
Organism
Xanthomonas citri pv. citri NT17 [GN:xcn]
Gene
J169_03571  citrate synthase [KO:K01647] [EC:2.3.3.1]
J169_01268  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
J169_02035  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
J169_02038  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J169_04010  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
J169_01169  Isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
J169_01684  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J169_01683  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
J169_01682  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J169_03841  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J169_03419  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
J169_03420  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
J169_02233  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
J169_02235  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
J169_02231  succinate dehydrogenase subunit C [KO:K00241]
J169_02232  succinate dehydrogenase subunit D [KO:K00242]
J169_01603  fumarase, class I, homodimeric [KO:K01676] [EC:4.2.1.2]
J169_01691  fumarase, class II [KO:K01679] [EC:4.2.1.2]
J169_01129  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
J169_00694  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
J169_03843  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xcn00010  Glycolysis / Gluconeogenesis
xcn00053  Ascorbate and aldarate metabolism
xcn00061  Fatty acid biosynthesis
xcn00071  Fatty acid degradation
xcn00190  Oxidative phosphorylation
xcn00220  Arginine biosynthesis
xcn00250  Alanine, aspartate and glutamate metabolism
xcn00280  Valine, leucine and isoleucine degradation
xcn00350  Tyrosine metabolism
xcn00470  D-Amino acid metabolism
xcn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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