KEGG   PATHWAY: xho00020
Entry
xho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xenorhabdus hominickii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xho00020  Citrate cycle (TCA cycle)
xho00020

Module
xho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:xho00020]
xho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xho00020]
xho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xho00020]
xho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xho00020]
xho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xho00020]
Other DBs
GO: 0006099
Organism
Xenorhabdus hominickii [GN:xho]
Gene
A9255_09605  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A9255_00210  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
A9255_05640  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A9255_11030  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A9255_07520  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A9255_09580  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A9255_09575  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A9255_11035  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9255_09565  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A9255_09570  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A9255_09590  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A9255_09585  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A9255_09600  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A9255_09595  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A9255_16925  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A9255_16920  fumarate reductase [KO:K00245] [EC:1.3.5.1]
A9255_16915  fumarate reductase subunit C [KO:K00246]
A9255_16910  fumarate reductase [KO:K00247]
A9255_05525  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A9255_13745  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A9255_15575  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A9255_11045  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A9255_11040  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xho00010  Glycolysis / Gluconeogenesis
xho00053  Ascorbate and aldarate metabolism
xho00061  Fatty acid biosynthesis
xho00071  Fatty acid degradation
xho00190  Oxidative phosphorylation
xho00220  Arginine biosynthesis
xho00250  Alanine, aspartate and glutamate metabolism
xho00280  Valine, leucine and isoleucine degradation
xho00350  Tyrosine metabolism
xho00470  D-Amino acid metabolism
xho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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