KEGG   PATHWAY: pcaf00020
Entry
pcaf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paraburkholderia caffeinilytica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcaf00020  Citrate cycle (TCA cycle)
pcaf00020

Module
pcaf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcaf00020]
pcaf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcaf00020]
pcaf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcaf00020]
pcaf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcaf00020]
pcaf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcaf00020]
Other DBs
GO: 0006099
Organism
Paraburkholderia caffeinilytica [GN:pcaf]
Gene
DSC91_002877  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSC91_004591  citrate synthase [KO:K01647] [EC:2.3.3.1]
DSC91_001222  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSC91_002889  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DSC91_004573  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
DSC91_000450  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DSC91_006779  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
DSC91_006780  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DSC91_002535  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSC91_003947  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSC91_006781  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSC91_004708  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DSC91_004709  succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DSC91_001806  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
DSC91_002880  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSC91_002879  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
DSC91_002881  succinate dehydrogenase [KO:K00242]
DSC91_006482  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DSC91_004338  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DSC91_002884  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSC91_005455  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DSC91_003949  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DSC91_005373  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
DSC91_002534  dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcaf00010  Glycolysis / Gluconeogenesis
pcaf00053  Ascorbate and aldarate metabolism
pcaf00061  Fatty acid biosynthesis
pcaf00071  Fatty acid degradation
pcaf00190  Oxidative phosphorylation
pcaf00220  Arginine biosynthesis
pcaf00250  Alanine, aspartate and glutamate metabolism
pcaf00280  Valine, leucine and isoleucine degradation
pcaf00350  Tyrosine metabolism
pcaf00470  D-Amino acid metabolism
pcaf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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