KEGG   PATHWAY: pfl02025
Entry
pfl02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas protegens Pf-5
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pfl02025  Biofilm formation - Pseudomonas aeruginosa
pfl02025

Organism
Pseudomonas protegens Pf-5 [GN:pfl]
Gene
PFL_0197  [KO:K10914]
PFL_0543  icc; 3',5'-cyclic-nucleotide phosphodiesterase [KO:K03651] [EC:3.1.4.53]
PFL_0664  retS; sensor histidine kinase/response regulator RetS [KO:K20972]
PFL_0744  [KO:K21021] [EC:2.7.7.65]
PFL_1013  algA; alginate biosynthesis protein AlgA [KO:K16011] [EC:2.7.7.13 5.3.1.8]
PFL_1022  alg44; alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
PFL_1129  [KO:K13487]
PFL_1130  [KO:K13488]
PFL_1132  [KO:K13489]
PFL_1133  [KO:K13490]
PFL_1134  [KO:K13491] [EC:3.1.1.61]
PFL_1135  [KO:K11444] [EC:2.7.7.65]
PFL_1506  [KO:K10914]
PFL_1634  fleQ; sigma 54 dependent transcriptional regulator FleQ [KO:K10941]
PFL_1643  [KO:K20978]
PFL_1644  [KO:K20977]
PFL_1645  [KO:K20976]
PFL_1667  fliA; motility sigma factor FliA [KO:K02405]
PFL_1738  [KO:K20974] [EC:2.7.13.3]
PFL_2095  rsmE; translational regulator RsmE [KO:K03563]
PFL_2203  pedS1; two-component sensor histidine kinase PedS1 [KO:K20975] [EC:2.7.13.3]
PFL_2212  pedR2; two-component transcriptional regulator PedR2 [KO:K07689]
PFL_2863  [KO:K21023] [EC:2.7.7.65]
PFL_2972  pelA; biofilm formation protein PelA [KO:K21006]
PFL_2973  pelB; biofilm formation protein PelB [KO:K21007]
PFL_2974  pelC; putative polysaccharide auxiliary transport protein PelC [KO:K21008]
PFL_2975  pelD; putative polysaccharide auxiliary transport protein PelD [KO:K21009]
PFL_2976  pelE; putative polysaccharide auxiliary transport protein PelE [KO:K21010]
PFL_2977  pelF; putative glycosyltransferase PelF [KO:K21011]
PFL_2978  pelG; polysaccharide exporter, PST family PelG [KO:K21012]
PFL_3563  gacA; response regulator GacA [KO:K07689]
PFL_3596  [KO:K21019] [EC:2.7.7.65]
PFL_4208  pslA; putative glycosyltransferase PslA [KO:K20997]
PFL_4209  pslB; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase PslB [KO:K16011] [EC:2.7.7.13 5.3.1.8]
PFL_4210  pslD; polysaccharide biosynthesis/export protein PslD [KO:K20987]
PFL_4211  pslE; polysaccharide biosynthesis/export protein PslE [KO:K20998]
PFL_4212  pslF; putative glycosyltransferase PslF [KO:K20999]
PFL_4213  pslG; putative glycosyl hydrolase PslG [KO:K21000]
PFL_4214  pslH; putative glycosyltransferase PslH [KO:K21001]
PFL_4215  pslI; putative glycosyltransferase PslI [KO:K21002]
PFL_4216  pslJ; membrane protein PslJ [KO:K21003]
PFL_4218  pslK; membrane protein PslK [KO:K21004]
PFL_4243  [KO:K20973] [EC:2.7.13.3]
PFL_4451  gacS; sensor protein GacS [KO:K07678] [EC:2.7.13.3]
PFL_4484  [KO:K02398]
PFL_4504  rsmA; translational regulator RsmA [KO:K03563]
PFL_4800  [KO:K21019] [EC:2.7.7.65]
PFL_4827  [KO:K21024] [EC:3.1.4.52]
PFL_5262  [KO:K10914]
PFL_5426  ladS; sensor histidine kinase/response regulator [KO:K20971]
PFL_5483  [KO:K16011] [EC:2.7.7.13 5.3.1.8]
PFL_5619  vfr; cyclic nucleotide-binding transcriptional regulator Vfr [KO:K10914]
PFL_5623  trpG; anthranilate synthase, component II [KO:K01658] [EC:4.1.3.27]
PFL_5629  trpE; anthranilate synthase, component I [KO:K01657] [EC:4.1.3.27]
PFL_5822  chpC; chemosensory protein ChpC [KO:K06598]
PFL_5823  chpA; putative sensor histidine kinase/response regulator ChpA [KO:K06596]
PFL_5824  pilJ; type IV pilus biogenesis protein PilJ [KO:K02660]
PFL_5825  pilI; type IV pilus biogenesis protein PilI [KO:K02659]
PFL_5826  pilH; type IV pilus response regulator PilH [KO:K02658]
PFL_5827  pilG; type IV pilus response regulator PilG [KO:K02657]
PFL_6078  ppkA; serine/threonine protein kinase PpkA [KO:K11912] [EC:2.7.11.1]
PFL_6079  pppA; serine/threonine phosphoprotein phosphatase PppA [KO:K11915] [EC:3.1.3.16]
PFL_6080  tagF; type VI secretion-associated protein TagF [KO:K11890]
PFL_6081  tssM; type VI secretion protein TssM [KO:K11891]
PFL_6083  tssK; type VI secretion protein TssK [KO:K11893]
PFL_6085  fha; type VI secretion protein Fha [KO:K11913]
PFL_6086  tssA; type VI secretion protein TssA [KO:K11902]
PFL_6087  tssB; type VI secretion protein TssB [KO:K11901]
PFL_6088  tssC; type VI secretion protein TssC [KO:K11900]
PFL_6089  hcp; type VI secretion system effector Hcp [KO:K11903]
PFL_6092  tssG; type VI secretion protein TssG [KO:K11895]
PFL_6093  clpV; type VI secretion ATPase ClpV [KO:K11907]
PFL_6285  rsmZ; RsmZ RNA [KO:K20970]
PFL_6291  rsmY; RsmY RNA [KO:K20969]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pfl02024  Quorum sensing
pfl02040  Flagellar assembly
pfl03070  Bacterial secretion system
KO pathway
ko02025   

DBGET integrated database retrieval system