KEGG   PATHWAY: pgd00630
Entry
pgd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Phaeobacter gallaeciensis DSM 26640
Class
Metabolism; Carbohydrate metabolism
Pathway map
pgd00630  Glyoxylate and dicarboxylate metabolism
pgd00630

Module
pgd_M00373  Ethylmalonyl pathway [PATH:pgd00630]
pgd_M00621  Glycine cleavage system [PATH:pgd00630]
pgd_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pgd00630]
Other DBs
GO: 0046487 0043648
Organism
Phaeobacter gallaeciensis DSM 26640 [GN:pgd]
Gene
Gal_02110  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Gal_02462  Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase [KO:K01895] [EC:6.2.1.1]
Gal_02501  malate synthase [KO:K01638] [EC:2.3.3.9]
Gal_03137  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Gal_00542  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Gal_01646  citrate synthase [KO:K01647] [EC:2.3.3.1]
Gal_01510  aconitase [KO:K01681] [EC:4.2.1.3]
Gal_03162  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Gal_02202  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Gal_03502  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Gal_03377  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Gal_03090  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Gal_03163  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Gal_00894  Acyl dehydratase [KO:K17865] [EC:4.2.1.55]
Gal_03115  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
Gal_00944  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Gal_03117  (R)-ethylmalonyl-CoA mutase [KO:K14447] [EC:5.4.99.63]
Gal_00245  (2S)-methylsuccinyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
Gal_03131  L-erythro-3-methylmalyl-CoA dehydratase [KO:K14449] [EC:4.2.1.148]
Gal_00369  beta-methylmalyl-CoA/L-malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
Gal_03134  (3S)-malyl-CoA thioesterase [KO:K14451] [EC:3.1.2.30]
Gal_01245  biotin carboxyl carrier protein/biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Gal_01240  propionyl-CoA carboxylase carboxyltransferase subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Gal_01249  methylmalonyl-CoA mutase methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Gal_00459  FAD/FMN-containing dehydrogenase [KO:K00104] [EC:1.1.99.14]
Gal_00460  FAD/FMN-containing dehydrogenase [KO:K11472] [EC:1.1.99.14]
Gal_00461  Fe-S oxidoreductase [KO:K11473] [EC:1.1.99.14]
Gal_01118  Catalase [KO:K03781] [EC:1.11.1.6]
Gal_01120  Catalase [KO:K03781] [EC:1.11.1.6]
Gal_01159  Catalase [KO:K03781] [EC:1.11.1.6]
Gal_00598  Lactate dehydrogenase [KO:K00015] [EC:1.1.1.26]
Gal_00773  Phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Gal_00331  haloacid dehalogenase superfamily, subfamily IA [KO:K01091] [EC:3.1.3.18]
Gal_02635  haloacid dehalogenase superfamily, subfamily IA [KO:K01091] [EC:3.1.3.18]
Gal_02467  haloacid dehalogenase superfamily, subfamily IA [KO:K01091] [EC:3.1.3.18]
Gal_00997  Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Gal_00709  Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Gal_01521  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Gal_02952  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Gal_02334  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Gal_02336  Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Gal_00934  Glycine/serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Gal_02218  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Gal_02948  glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
Gal_04252  glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
Gal_04254  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Gal_01585  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gal_03147  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gal_04321  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gal_04257  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gal_02949  glycine cleavage system H protein [KO:K02437]
Gal_04253  glycine cleavage system H protein [KO:K02437]
Gal_00111  Putative glycerate kinase [KO:K11529] [EC:2.7.1.165]
Gal_00625  Entner-Doudoroff aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Gal_00661  Anaerobic dehydrogenase, typically selenocysteine-containing [KO:K00123] [EC:1.17.1.9]
Gal_00854  NAD-dependent formate dehydrogenase catalytic subunit/iron-sulfur protein [KO:K00123] [EC:1.17.1.9]
Gal_00853  NAD-dependent formate dehydrogenase flavoprotein subunit [KO:K22515] [EC:1.17.1.9]
Gal_00662  formate dehydrogenase beta subunit [KO:K00124]
Gal_00663  formate dehydrogenase gamma subunit [KO:K00127]
Gal_00467  Esterase/lipase [KO:K01432] [EC:3.5.1.9]
Gal_03701  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pgd00010  Glycolysis / Gluconeogenesis
pgd00020  Citrate cycle (TCA cycle)
pgd00030  Pentose phosphate pathway
pgd00053  Ascorbate and aldarate metabolism
pgd00071  Fatty acid degradation
pgd00230  Purine metabolism
pgd00250  Alanine, aspartate and glutamate metabolism
pgd00260  Glycine, serine and threonine metabolism
pgd00620  Pyruvate metabolism
pgd00710  Carbon fixation by Calvin cycle
pgd00750  Vitamin B6 metabolism
pgd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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