KEGG   PATHWAY: pjd00630
Entry
pjd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paenibacillus sp. JDR-2
Class
Metabolism; Carbohydrate metabolism
Pathway map
pjd00630  Glyoxylate and dicarboxylate metabolism
pjd00630

Other DBs
GO: 0046487 0043648
Organism
Paenibacillus sp. JDR-2 [GN:pjd]
Gene
Pjdr2_4673  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Pjdr2_3796  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Pjdr2_4471  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Pjdr2_2770  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Pjdr2_4473  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Pjdr2_2034  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Pjdr2_0811  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Pjdr2_2766  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pjdr2_5427  Catalase [KO:K03781] [EC:1.11.1.6]
Pjdr2_2987  Catalase [KO:K03781] [EC:1.11.1.6]
Pjdr2_1443  Catalase [KO:K03781] [EC:1.11.1.6]
Pjdr2_5886  Catalase [KO:K03781] [EC:1.11.1.6]
Pjdr2_1505  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Pjdr2_4006  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Pjdr2_0215  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Pjdr2_4499  Haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
Pjdr2_1371  Haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
Pjdr2_2619  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Pjdr2_4778  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Pjdr2_5834  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pjdr2_2320  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pjdr2_2653  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pjdr2_1144  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pjdr2_0047  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Pjdr2_5139  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pjdr2_0764  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pjdr2_1982  bicupin, oxalate decarboxylase family [KO:K01569] [EC:4.1.1.2]
Pjdr2_1112  cyclase family protein [KO:K07130] [EC:3.5.1.9]
Pjdr2_1253  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pjd00010  Glycolysis / Gluconeogenesis
pjd00020  Citrate cycle (TCA cycle)
pjd00030  Pentose phosphate pathway
pjd00053  Ascorbate and aldarate metabolism
pjd00071  Fatty acid degradation
pjd00230  Purine metabolism
pjd00250  Alanine, aspartate and glutamate metabolism
pjd00260  Glycine, serine and threonine metabolism
pjd00620  Pyruvate metabolism
pjd00710  Carbon fixation by Calvin cycle
pjd00750  Vitamin B6 metabolism
pjd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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