KEGG   PATHWAY: plal00020
Entry
plal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas lalkuanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plal00020  Citrate cycle (TCA cycle)
plal00020

Module
plal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:plal00020]
plal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plal00020]
plal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plal00020]
plal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plal00020]
plal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plal00020]
Other DBs
GO: 0006099
Organism
Pseudomonas lalkuanensis [GN:plal]
Gene
FXN65_10050  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FXN65_18715  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FXN65_18100  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FXN65_15630  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FXN65_15635  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FXN65_10075  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FXN65_10080  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FXN65_10085  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FXN65_15840  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FXN65_10095  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FXN65_10090  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FXN65_00640  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
FXN65_10065  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FXN65_10070  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FXN65_10055  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FXN65_10060  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FXN65_22485  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FXN65_06235  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FXN65_11055  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FXN65_23155  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FXN65_12125  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
FXN65_27495  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FXN65_27490  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
FXN65_26570  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FXN65_25675  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FXN65_13980  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FXN65_13975  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FXN65_25680  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
FXN65_13970  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plal00010  Glycolysis / Gluconeogenesis
plal00053  Ascorbate and aldarate metabolism
plal00061  Fatty acid biosynthesis
plal00071  Fatty acid degradation
plal00190  Oxidative phosphorylation
plal00220  Arginine biosynthesis
plal00250  Alanine, aspartate and glutamate metabolism
plal00280  Valine, leucine and isoleucine degradation
plal00350  Tyrosine metabolism
plal00470  D-Amino acid metabolism
plal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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