KEGG   PATHWAY: plg00020
Entry
plg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paucimonas lemoignei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plg00020  Citrate cycle (TCA cycle)
plg00020

Module
plg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:plg00020]
plg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plg00020]
plg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plg00020]
plg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plg00020]
plg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plg00020]
Other DBs
GO: 0006099
Organism
Paucimonas lemoignei [GN:plg]
Gene
NCTC10937_03296  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC10937_02039  prpC; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NCTC10937_03060  acn; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NCTC10937_03699  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NCTC10937_03643  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC10937_03524  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCTC10937_03290  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC10937_03289  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCTC10937_03288  lpdG; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10937_05253  lpd3; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10937_03285  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC10937_03286  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC10937_05170  scpC; Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
NCTC10937_03293  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC10937_03292  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
NCTC10937_03295  sdhC; succinate dehydrogenase, cytochrome b subunit [KO:K00241]
NCTC10937_03294  sdhD; succinate dehydrogenase [KO:K00242]
NCTC10937_01234  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NCTC10937_01014  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCTC10937_04002  fumC-1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCTC10937_04371  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC10937_02390  mqo1; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC10937_05221  cfiB; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
NCTC10937_05220  cfiA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
NCTC10937_00235  pckA_1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NCTC10937_00689  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
NCTC10937_00688  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plg00010  Glycolysis / Gluconeogenesis
plg00053  Ascorbate and aldarate metabolism
plg00061  Fatty acid biosynthesis
plg00071  Fatty acid degradation
plg00190  Oxidative phosphorylation
plg00220  Arginine biosynthesis
plg00250  Alanine, aspartate and glutamate metabolism
plg00280  Valine, leucine and isoleucine degradation
plg00350  Tyrosine metabolism
plg00470  D-Amino acid metabolism
plg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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