KEGG   PATHWAY: plh00240
Entry
plh00240                    Pathway                                
Name
Pyrimidine metabolism - Planctomyces sp. SH-PL62
Class
Metabolism; Nucleotide metabolism
Pathway map
plh00240  Pyrimidine metabolism
plh00240

Module
plh_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:plh00240]
plh_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:plh00240]
Other DBs
GO: 0006220 0006213
Organism
Planctomyces sp. SH-PL62 [GN:plh]
Gene
VT85_00015  carB; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
VT85_04765  carA; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
VT85_05895  pyrB; Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
VT85_05890  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
VT85_03390  pyrD; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit [KO:K17828] [EC:1.3.1.14]
VT85_23530  pyrK_2; Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [KO:K02823]
VT85_05270  preA; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA [KO:K00226] [EC:1.3.98.1]
VT85_07470  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
VT85_04495  orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
VT85_20345  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
VT85_07760  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
VT85_11165  yhdE; Maf-like protein YhdE [KO:K06287] [EC:3.6.1.-]
VT85_16270  mutT4; Putative mutator protein MutT4 [KO:K01518] [EC:3.6.1.17]
VT85_17185  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
VT85_24050  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
VT85_25360  surE_2; 5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
VT85_09250  surE_1; 5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
VT85_19550  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
VT85_05900  pyrR; Bifunctional protein PyrR [KO:K02825] [EC:2.4.2.9]
VT85_19325  hypothetical protein [KO:K09769] [EC:3.1.4.16]
VT85_19545  pdp; Pyrimidine-nucleoside phosphorylase [KO:K00756] [EC:2.4.2.2]
VT85_14475  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
VT85_09345  dcd; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
VT85_13640  nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha [KO:K00525] [EC:1.17.4.1]
VT85_24355  nrdJ; Vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
VT85_13635  nrdB; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
VT85_16275  tmk; Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
VT85_14265  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
plh00030  Pentose phosphate pathway
plh00220  Arginine biosynthesis
plh00250  Alanine, aspartate and glutamate metabolism
plh00280  Valine, leucine and isoleucine degradation
plh00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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