KEGG   PATHWAY: plig00020
Entry
plig00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Pristimantibacillus lignocellulolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plig00020  Citrate cycle (TCA cycle)
plig00020

Module
plig_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plig00020]
plig_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plig00020]
plig_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plig00020]
plig_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plig00020]
Other DBs
GO: 0006099
Organism
Candidatus Pristimantibacillus lignocellulolyticus [GN:plig]
Gene
NAG76_00405  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NAG76_00410  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NAG76_00415  [KO:K00241]
NAG76_02630  acnA; aconitate hydratase AcnA [KO:K27802]
NAG76_02875  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NAG76_05670  [KO:K00116] [EC:1.1.5.4]
NAG76_13085  [KO:K00164] [EC:1.2.4.2]
NAG76_13090  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NAG76_13410  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
NAG76_13415  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NAG76_13420  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NAG76_16365  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NAG76_16370  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NAG76_19150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAG76_19155  [KO:K00627] [EC:2.3.1.12]
NAG76_19160  [KO:K00162] [EC:1.2.4.1]
NAG76_19165  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NAG76_20605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plig00010  Glycolysis / Gluconeogenesis
plig00053  Ascorbate and aldarate metabolism
plig00061  Fatty acid biosynthesis
plig00071  Fatty acid degradation
plig00190  Oxidative phosphorylation
plig00220  Arginine biosynthesis
plig00250  Alanine, aspartate and glutamate metabolism
plig00280  Valine, leucine and isoleucine degradation
plig00350  Tyrosine metabolism
plig00470  D-Amino acid metabolism
plig00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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