KEGG   PATHWAY: pman00020
Entry
pman00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas mandelii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pman00020  Citrate cycle (TCA cycle)
pman00020

Module
pman_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pman00020]
pman_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pman00020]
pman_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pman00020]
pman_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pman00020]
pman_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pman00020]
pman_M00982  Methylcitrate cycle [PATH:pman00020]
Other DBs
GO: 0006099
Organism
Pseudomonas mandelii [GN:pman]
Gene
OU5_0225  [KO:K00161] [EC:1.2.4.1]
OU5_0226  [KO:K00162] [EC:1.2.4.1]
OU5_0227  [KO:K00627] [EC:2.3.1.12]
OU5_0723  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OU5_0898  [KO:K00116] [EC:1.1.5.4]
OU5_1176  icd; isocitrate dehydrogenase, NADP-dependent type [KO:K00031] [EC:1.1.1.42]
OU5_1177  [KO:K00031] [EC:1.1.1.42]
OU5_1736  [KO:K01679] [EC:4.2.1.2]
OU5_2556  [KO:K01679] [EC:4.2.1.2]
OU5_2996  aceE1; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
OU5_2997  [KO:K00627] [EC:2.3.1.12]
OU5_3216  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
OU5_3335  [KO:K18118] [EC:2.8.3.18]
OU5_3487  [KO:K00382] [EC:1.8.1.4]
OU5_3519  accC; biotin carboxylase [KO:K01959] [EC:6.4.1.1]
OU5_3520  [KO:K01960] [EC:6.4.1.1]
OU5_4472  [KO:K00116] [EC:1.1.5.4]
OU5_4832  [KO:K01676] [EC:4.2.1.2]
OU5_5226  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
OU5_5227  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OU5_5228  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
OU5_5229  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OU5_5230  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
OU5_5231  [KO:K00164] [EC:1.2.4.2]
OU5_5232  sucB; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
OU5_5233  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
OU5_5234  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
OU5_5235  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
OU5_5387  [KO:K01659] [EC:2.3.3.5]
OU5_5458  [KO:K27802]
OU5_6088  [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pman00010  Glycolysis / Gluconeogenesis
pman00053  Ascorbate and aldarate metabolism
pman00061  Fatty acid biosynthesis
pman00071  Fatty acid degradation
pman00190  Oxidative phosphorylation
pman00220  Arginine biosynthesis
pman00250  Alanine, aspartate and glutamate metabolism
pman00280  Valine, leucine and isoleucine degradation
pman00350  Tyrosine metabolism
pman00470  D-Amino acid metabolism
pman00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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