KEGG   PATHWAY: psi00020
Entry
psi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Providencia stuartii MRSN 2154
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psi00020  Citrate cycle (TCA cycle)
psi00020

Module
psi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psi00020]
psi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psi00020]
psi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psi00020]
psi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psi00020]
psi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psi00020]
psi_M00982  Methylcitrate cycle [PATH:psi00020]
Other DBs
GO: 0006099
Organism
Providencia stuartii MRSN 2154 [GN:psi]
Gene
S70_00330  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
S70_00450  [KO:K27802]
S70_01440  [KO:K00031] [EC:1.1.1.42]
S70_01990  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
S70_03425  [KO:K01659] [EC:2.3.3.5]
S70_03740  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
S70_03750  [KO:K00382] [EC:1.8.1.4]
S70_03755  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
S70_03760  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
S70_10030  [KO:K01610] [EC:4.1.1.49]
S70_11990  [KO:K00116] [EC:1.1.5.4]
S70_12080  [KO:K00024] [EC:1.1.1.37]
S70_12865  [KO:K01676] [EC:4.2.1.2]
S70_13565  [KO:K00247]
S70_13570  [KO:K00246]
S70_13575  [KO:K00245] [EC:1.3.5.1]
S70_13580  [KO:K00244] [EC:1.3.5.1]
S70_15735  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
S70_15740  [KO:K00241]
S70_15745  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
S70_15750  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
S70_15755  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
S70_15760  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
S70_15765  [KO:K00658] [EC:2.3.1.61]
S70_15770  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
S70_15775  [KO:K01902] [EC:6.2.1.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psi00010  Glycolysis / Gluconeogenesis
psi00053  Ascorbate and aldarate metabolism
psi00061  Fatty acid biosynthesis
psi00071  Fatty acid degradation
psi00190  Oxidative phosphorylation
psi00220  Arginine biosynthesis
psi00250  Alanine, aspartate and glutamate metabolism
psi00280  Valine, leucine and isoleucine degradation
psi00350  Tyrosine metabolism
psi00470  D-Amino acid metabolism
psi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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