KEGG   PATHWAY: psmb00020
Entry
psmb00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas sp. MT33b
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psmb00020  Citrate cycle (TCA cycle)
psmb00020

Module
psmb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psmb00020]
psmb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psmb00020]
psmb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psmb00020]
psmb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psmb00020]
psmb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psmb00020]
psmb_M00982  Methylcitrate cycle [PATH:psmb00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas sp. MT33b [GN:psmb]
Gene
H3302_00260  [KO:K01679] [EC:4.2.1.2]
H3302_00970  acnA; aconitate hydratase AcnA [KO:K27802]
H3302_01125  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
H3302_01430  [KO:K01610] [EC:4.1.1.49]
H3302_06645  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H3302_07310  [KO:K01647] [EC:2.3.3.1]
H3302_07315  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
H3302_07320  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
H3302_07325  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H3302_07330  [KO:K00240] [EC:1.3.5.1]
H3302_07335  [KO:K00164] [EC:1.2.4.2]
H3302_07340  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H3302_07345  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H3302_07350  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H3302_08620  [KO:K00031] [EC:1.1.1.42]
H3302_08800  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
H3302_09845  [KO:K01676] [EC:4.2.1.2]
H3302_13100  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H3302_13135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3302_13140  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
H3302_13145  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H3302_19140  [KO:K00030] [EC:1.1.1.41]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psmb00010  Glycolysis / Gluconeogenesis
psmb00053  Ascorbate and aldarate metabolism
psmb00061  Fatty acid biosynthesis
psmb00071  Fatty acid degradation
psmb00190  Oxidative phosphorylation
psmb00220  Arginine biosynthesis
psmb00250  Alanine, aspartate and glutamate metabolism
psmb00280  Valine, leucine and isoleucine degradation
psmb00350  Tyrosine metabolism
psmb00470  D-Amino acid metabolism
psmb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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