KEGG   PATHWAY: psya00020
Entry
psya00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Psychrobacter sp. AntiMn-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psya00020  Citrate cycle (TCA cycle)
psya00020

Module
psya_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psya00020]
psya_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psya00020]
psya_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psya00020]
psya_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psya00020]
Other DBs
GO: 0006099
Organism
Psychrobacter sp. AntiMn-1 [GN:psya]
Gene
AOT82_1689  citrate synthase [KO:K01647] [EC:2.3.3.1]
AOT82_407  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AOT82_1937  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AOT82_867  aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AOT82_1444  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOT82_1445  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOT82_1684  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AOT82_1683  dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
AOT82_1681  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOT82_847  pyruvate/2-oxoglutarate dehydrogenase complex,dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
AOT82_1679  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOT82_1680  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
AOT82_1686  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AOT82_1685  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AOT82_1688  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
AOT82_1687  succinate dehydrogenase membrane anchor subunit [KO:K00242]
AOT82_1166  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AOT82_2344  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOT82_113  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
AOT82_114  dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psya00010  Glycolysis / Gluconeogenesis
psya00053  Ascorbate and aldarate metabolism
psya00061  Fatty acid biosynthesis
psya00071  Fatty acid degradation
psya00190  Oxidative phosphorylation
psya00220  Arginine biosynthesis
psya00250  Alanine, aspartate and glutamate metabolism
psya00280  Valine, leucine and isoleucine degradation
psya00350  Tyrosine metabolism
psya00470  D-Amino acid metabolism
psya00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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