KEGG   PATHWAY: pur00020
Entry
pur00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Psychrobacter urativorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pur00020  Citrate cycle (TCA cycle)
pur00020

Module
pur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pur00020]
pur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pur00020]
pur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pur00020]
pur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pur00020]
pur_M00982  Methylcitrate cycle [PATH:pur00020]
Other DBs
GO: 0006099
Organism
Psychrobacter urativorans [GN:pur]
Gene
AOC03_01155  [KO:K01659] [EC:2.3.3.5]
AOC03_04310  [KO:K00024] [EC:1.1.1.37]
AOC03_05895  acnA; aconitate hydratase [KO:K27802]
AOC03_06940  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AOC03_06945  [KO:K00241]
AOC03_06950  [KO:K00242]
AOC03_06955  [KO:K00239] [EC:1.3.5.1]
AOC03_06960  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AOC03_06965  [KO:K00164] [EC:1.2.4.2]
AOC03_06970  [KO:K00658] [EC:2.3.1.61]
AOC03_06975  [KO:K00382] [EC:1.8.1.4]
AOC03_06980  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AOC03_06985  [KO:K01902] [EC:6.2.1.5]
AOC03_07445  [KO:K18118] [EC:2.8.3.18]
AOC03_08040  [KO:K00031] [EC:1.1.1.42]
AOC03_08045  [KO:K00031] [EC:1.1.1.42]
AOC03_09560  [KO:K01679] [EC:4.2.1.2]
AOC03_10215  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AOC03_10330  [KO:K00382] [EC:1.8.1.4]
AOC03_11185  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AOC03_11190  [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pur00010  Glycolysis / Gluconeogenesis
pur00053  Ascorbate and aldarate metabolism
pur00061  Fatty acid biosynthesis
pur00071  Fatty acid degradation
pur00190  Oxidative phosphorylation
pur00220  Arginine biosynthesis
pur00250  Alanine, aspartate and glutamate metabolism
pur00280  Valine, leucine and isoleucine degradation
pur00350  Tyrosine metabolism
pur00470  D-Amino acid metabolism
pur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system