PATHWAY: pym00470
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Entry
pym00470 Pathway
Name
D-Amino acid metabolism - Pseudomonas yamanorum
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
pym00470
D-Amino acid metabolism
Ortholog table
Module
pym_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
pym00470
]
Other DBs
GO:
0046416
Organism
Pseudomonas yamanorum [GN:
pym
]
Gene
AK972_6108
Alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
AK972_5075
D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
AK972_0794
D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
AK972_2727
Aspartate racemase [KO:
K25316
] [EC:
5.1.1.10
]
AK972_3346
Glutaminase [KO:
K01425
] [EC:
3.5.1.2
]
AK972_3826
L-asparaginase [KO:
K05597
] [EC:
3.5.1.38
]
AK972_5029
Glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
AK972_0790
UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
AK972_5704
D-cysteine desulfhydrase [KO:
K05396
] [EC:
4.4.1.15
]
AK972_6131
Diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
AK972_3305
Diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
AK972_3686
Diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
AK972_6132
Diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
AK972_0849
Sarcosine oxidase beta subunit [KO:
K19746
] [EC:
1.4.99.6
]
AK972_3853
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
AK972_3856
D-amino acid dehydrogenase family protein in hydroxy-L-proline catabolic cluster [KO:
K21060
] [EC:1.5.99.-]
AK972_3854
1-pyrroline-4-hydroxy-2-carboxylate deaminase [KO:
K21062
] [EC:
3.5.4.22
]
AK972_2896
Ketoglutarate semialdehyde dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
AK972_3855
Ketoglutarate semialdehyde dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
AK972_6106
D-amino acid dehydrogenase small subunit [KO:
K00285
] [EC:
1.4.5.1
]
AK972_0199
D-amino acid dehydrogenase small subunit [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
pym00010
Glycolysis / Gluconeogenesis
pym00020
Citrate cycle (TCA cycle)
pym00250
Alanine, aspartate and glutamate metabolism
pym00260
Glycine, serine and threonine metabolism
pym00270
Cysteine and methionine metabolism
pym00300
Lysine biosynthesis
pym00310
Lysine degradation
pym00330
Arginine and proline metabolism
pym00340
Histidine metabolism
pym00360
Phenylalanine metabolism
pym00550
Peptidoglycan biosynthesis
pym00620
Pyruvate metabolism
KO pathway
ko00470
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