KEGG   PATHWAY: pys00020
Entry
pys00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrococcus sp. ST04
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pys00020  Citrate cycle (TCA cycle)
pys00020

Module
pys_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pys00020]
pys_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pys00020]
pys_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pys00020]
Other DBs
GO: 0006099
Organism
Pyrococcus sp. ST04 [GN:pys]
Gene
Py04_0358  citrate synthase [KO:K01647] [EC:2.3.3.1]
Py04_0356  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Py04_0357  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Py04_1638  3-isopropylmalate dehydrogenase [KO:K17753] [EC:1.1.1.286]
Py04_1551  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Py04_1554  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Py04_1550  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Py04_1553  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Py04_1549  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Py04_1552  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Py04_1555  2-oxoglutarate ferredoxin oxidoreductase, subunit delta [KO:K00176] [EC:1.2.7.3]
Py04_1574  fumarate hydratase (fumarase) alpha subunit [KO:K01677] [EC:4.2.1.2]
Py04_1575  fumarate hydratase (fumarase) beta subunit [KO:K01678] [EC:4.2.1.2]
Py04_0931  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
Py04_0438  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Py04_1077  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
Py04_1076  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Py04_1082  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
Py04_1078  pyuvate ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pys00010  Glycolysis / Gluconeogenesis
pys00061  Fatty acid biosynthesis
pys00071  Fatty acid degradation
pys00190  Oxidative phosphorylation
pys00220  Arginine biosynthesis
pys00250  Alanine, aspartate and glutamate metabolism
pys00280  Valine, leucine and isoleucine degradation
pys00350  Tyrosine metabolism
pys00470  D-Amino acid metabolism
pys00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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