KEGG   PATHWAY: rhy00260
Entry
rhy00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Rhodoferax koreense
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
rhy00260  Glycine, serine and threonine metabolism
rhy00260

Module
rhy_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rhy00260]
rhy_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:rhy00260]
rhy_M00621  Glycine cleavage system [PATH:rhy00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Rhodoferax koreense [GN:rhy]
Gene
RD110_10255  aspartate kinase [KO:K00928] [EC:2.7.2.4]
RD110_07135  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
RD110_07260  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
RD110_20045  homoserine kinase [KO:K02204] [EC:2.7.1.39]
RD110_07265  threonine synthase [KO:K01733] [EC:4.2.3.1]
RD110_03865  low-specificity L-threonine aldolase [KO:K01620] [EC:4.1.2.48]
RD110_18945  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RD110_23900  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RD110_03260  hypothetical protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RD110_24410  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RD110_16315  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RD110_09730  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RD110_16820  glycerate kinase [KO:K11529] [EC:2.7.1.165]
RD110_08340  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
RD110_05410  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
RD110_20905  phosphoglycerate kinase [KO:K15634] [EC:5.4.2.11]
RD110_09380  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
RD110_22630  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
RD110_00365  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
RD110_16055  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
RD110_21315  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
RD110_07825  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
RD110_11935  phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
RD110_12400  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
RD110_12410  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
RD110_08970  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RD110_16160  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RD110_12405  glycine cleavage system protein H [KO:K02437]
RD110_14195  CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
RD110_10390  CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
RD110_25775  aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
RD110_00750  threonine ammonia-lyase [KO:K01754] [EC:4.3.1.19]
RD110_21055  threonine dehydratase [KO:K01754] [EC:4.3.1.19]
RD110_06095  threonine ammonia-lyase, biosynthetic [KO:K01754] [EC:4.3.1.19]
RD110_13285  amino acid deaminase [KO:K01753] [EC:4.3.1.18]
RD110_07110  tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
RD110_07115  tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
rhy00010  Glycolysis / Gluconeogenesis
rhy00020  Citrate cycle (TCA cycle)
rhy00230  Purine metabolism
rhy00250  Alanine, aspartate and glutamate metabolism
rhy00270  Cysteine and methionine metabolism
rhy00290  Valine, leucine and isoleucine biosynthesis
rhy00300  Lysine biosynthesis
rhy00330  Arginine and proline metabolism
rhy00460  Cyanoamino acid metabolism
rhy00470  D-Amino acid metabolism
rhy00564  Glycerophospholipid metabolism
rhy00620  Pyruvate metabolism
rhy00630  Glyoxylate and dicarboxylate metabolism
rhy00640  Propanoate metabolism
rhy00680  Methane metabolism
rhy00860  Porphyrin metabolism
rhy00920  Sulfur metabolism
KO pathway
ko00260   
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