KEGG   PATHWAY: rhy00230
Entry
rhy00230                    Pathway                                
Name
Purine metabolism - Rhodoferax koreense
Class
Metabolism; Nucleotide metabolism
Pathway map
rhy00230  Purine metabolism
rhy00230

Module
rhy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rhy00230]
rhy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rhy00230]
rhy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rhy00230]
rhy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rhy00230]
rhy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:rhy00230]
rhy_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:rhy00230]
Other DBs
GO: 0006163 0042278
Organism
Rhodoferax koreense [GN:rhy]
Gene
RD110_17230  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
RD110_11390  ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
RD110_03095  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
RD110_20850  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
RD110_09280  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
RD110_13560  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
RD110_19230  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
RD110_25845  phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
RD110_13045  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
RD110_10010  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
RD110_25990  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
RD110_25995  5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
RD110_26005  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
RD110_26210  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
RD110_05995  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
RD110_20955  5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
RD110_06360  laccase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
RD110_00760  nucleoside hydrolase [KO:K01239] [EC:3.2.2.1]
RD110_13405  IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
RD110_18270  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
RD110_21465  non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
RD110_17115  xanthine dehydrogenase small subunit [KO:K13481] [EC:1.17.1.4]
RD110_17120  xanthine dehydrogenase molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
RD110_18100  xanthine dehydrogenase [KO:K11177] [EC:1.17.1.4]
RD110_18105  xanthine dehydrogenase [KO:K11178] [EC:1.17.1.4]
RD110_18110  aldehyde dehydrogenase iron-sulfur subunit [KO:K13483]
RD110_13415  glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
RD110_08260  GMP reductase [KO:K00364] [EC:1.7.1.7]
RD110_17415  guanine deaminase [KO:K01487] [EC:3.5.4.3]
RD110_21490  guanylate kinase [KO:K00942] [EC:2.7.4.8]
RD110_22975  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
RD110_22980  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
RD110_20655  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
RD110_21500  guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
RD110_15370  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
RD110_19900  GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
RD110_17870  adenylate cyclase [KO:K01768] [EC:4.6.1.1]
RD110_23400  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
RD110_16595  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
RD110_17345  hypothetical protein [KO:K01768] [EC:4.6.1.1]
RD110_26365  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
RD110_24745  hypothetical protein [KO:K01768] [EC:4.6.1.1]
RD110_06510  hypothetical protein [KO:K01768] [EC:4.6.1.1]
RD110_13880  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
RD110_18195  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
RD110_22990  carbohydrate kinase family protein [KO:K00856] [EC:2.7.1.20]
RD110_25870  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
RD110_17080  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
RD110_16035  adenylate kinase [KO:K00939] [EC:2.7.4.3]
RD110_15655  hypothetical protein [KO:K04765] [EC:3.6.1.9]
RD110_06335  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
RD110_09980  bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
RD110_15160  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
RD110_15155  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
RD110_16690  hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
RD110_23740  OHCU decarboxylase [KO:K13485] [EC:4.1.1.97]
RD110_20875  hypothetical protein [KO:K16841] [EC:5.1.99.3]
RD110_00305  Asp/Glu/hydantoin racemase [KO:K16841] [EC:5.1.99.3]
RD110_00385  Asp/Glu racemase [KO:K16841] [EC:5.1.99.3]
RD110_14550  chitin deacetylase [KO:K16842] [EC:3.5.2.5]
RD110_16700  allantoinase [KO:K16842] [EC:3.5.2.5]
RD110_14555  hypothetical protein [KO:K01483] [EC:4.3.2.3]
RD110_12760  ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
RD110_18050  urease subunit alpha [KO:K01428] [EC:3.5.1.5]
RD110_18045  urease subunit beta [KO:K01429] [EC:3.5.1.5]
RD110_18035  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
RD110_21205  gamma-glutamyltransferase [KO:K22602] [EC:3.5.1.126]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
rhy00030  Pentose phosphate pathway
rhy00220  Arginine biosynthesis
rhy00250  Alanine, aspartate and glutamate metabolism
rhy00260  Glycine, serine and threonine metabolism
rhy00340  Histidine metabolism
rhy00630  Glyoxylate and dicarboxylate metabolism
rhy00730  Thiamine metabolism
rhy00740  Riboflavin metabolism
rhy00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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