KEGG   PATHWAY: rmm00630
Entry
rmm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Roseovarius mucosus
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmm00630  Glyoxylate and dicarboxylate metabolism
rmm00630

Module
rmm_M00621  Glycine cleavage system [PATH:rmm00630]
rmm_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rmm00630]
Other DBs
GO: 0046487 0043648
Organism
Roseovarius mucosus [GN:rmm]
Gene
ROSMUCSMR3_00028  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
ROSMUCSMR3_00030  glnT; glutamine synthetase 3 [KO:K01915] [EC:6.3.1.2]
ROSMUCSMR3_00036  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
ROSMUCSMR3_00246  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ROSMUCSMR3_00429  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
ROSMUCSMR3_00540  aarA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ROSMUCSMR3_00601  puuA; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
ROSMUCSMR3_00603  puuA; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
ROSMUCSMR3_00619  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ROSMUCSMR3_00784  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ROSMUCSMR3_00788  acnA; aconitate hydratase A [KO:K27802]
ROSMUCSMR3_00815  [KO:K00123] [EC:1.17.1.9]
ROSMUCSMR3_00911  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ROSMUCSMR3_00981  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
ROSMUCSMR3_01013  frc; formyl-CoA:oxalate CoA-transferase [KO:K07749] [EC:2.8.3.16]
ROSMUCSMR3_01014  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
ROSMUCSMR3_01020  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K14067] [EC:6.2.1.9]
ROSMUCSMR3_01040  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ROSMUCSMR3_01044  accA1; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
ROSMUCSMR3_01050  pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
ROSMUCSMR3_01170  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ROSMUCSMR3_01322  mcd; (2S)-methylsuccinyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
ROSMUCSMR3_01416  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ROSMUCSMR3_01660  [KO:K00015] [EC:1.1.1.26]
ROSMUCSMR3_01789  lutA; lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
ROSMUCSMR3_01790  [KO:K11472] [EC:1.1.99.14]
ROSMUCSMR3_01791  [KO:K00104] [EC:1.1.99.14]
ROSMUCSMR3_01832  ccrA2; crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
ROSMUCSMR3_01834  scpA; methylmalonyl-CoA mutase [KO:K14447] [EC:5.4.99.63]
ROSMUCSMR3_01845  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
ROSMUCSMR3_01935  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ROSMUCSMR3_02043  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K03780] [EC:4.2.1.32]
ROSMUCSMR3_02044  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K03779] [EC:4.2.1.32]
ROSMUCSMR3_02149  mcl1; L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
ROSMUCSMR3_02240  ipuC; glutamate--isopropylamine ligase [KO:K01915] [EC:6.3.1.2]
ROSMUCSMR3_02247  [KO:K28179]
ROSMUCSMR3_02248  psdht; phenylserine dehydratase [KO:K28180]
ROSMUCSMR3_02249  dhaa; 3-hydroxy-D-aspartate aldolase [KO:K18425] [EC:4.1.3.41]
ROSMUCSMR3_02250  [KO:K28178]
ROSMUCSMR3_02367  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
ROSMUCSMR3_02368  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ROSMUCSMR3_02391  fadA; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
ROSMUCSMR3_02483  ttuD; putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
ROSMUCSMR3_02502  mch; mesaconyl-CoA hydratase [KO:K14449] [EC:4.2.1.148]
ROSMUCSMR3_02505  mcl2; (3S)-malyl-CoA thioesterase [KO:K14451] [EC:3.1.2.30]
ROSMUCSMR3_02508  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ROSMUCSMR3_02514  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
ROSMUCSMR3_02521  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ROSMUCSMR3_02629  [KO:K01458] [EC:3.5.1.68]
ROSMUCSMR3_02643  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ROSMUCSMR3_02702  [KO:K05606] [EC:5.1.99.1]
ROSMUCSMR3_02752  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ROSMUCSMR3_02839  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ROSMUCSMR3_02967  puuA; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
ROSMUCSMR3_03092  thlA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ROSMUCSMR3_03140  fdhF; formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
ROSMUCSMR3_03141  fdhB1; formate dehydrogenase iron-sulfur subunit [KO:K00124]
ROSMUCSMR3_03142  fdoI; formate dehydrogenase, cytochrome b556(fdo) subunit [KO:K00127]
ROSMUCSMR3_03289  katA; catalase [KO:K03781] [EC:1.11.1.6]
ROSMUCSMR3_03453  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K08692] [EC:6.2.1.9]
ROSMUCSMR3_03454  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K14067] [EC:6.2.1.9]
ROSMUCSMR3_03455  mcl1; L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
ROSMUCSMR3_03456  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ROSMUCSMR3_03626  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
ROSMUCSMR3_03671  nqo1; NADH-quinone oxidoreductase subunit 1 [KO:K22515] [EC:1.17.1.9]
ROSMUCSMR3_03701  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
ROSMUCSMR3_03702  gcvH; glycine cleavage system H protein [KO:K02437]
ROSMUCSMR3_03703  gcvP; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
ROSMUCSMR3_03722  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ROSMUCSMR3_03814  glyA2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
ROSMUCSMR3_03869  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ROSMUCSMR3_03945  hndA; NADP-reducing hydrogenase subunit HndA [KO:K00127]
ROSMUCSMR3_03946  hndC; NADP-reducing hydrogenase subunit HndC [KO:K00124]
ROSMUCSMR3_03947  [KO:K00123] [EC:1.17.1.9]
ROSMUCSMR3_03949  [KO:K00126] [EC:1.17.1.9]
ROSMUCSMR3_04090  katA; catalase [KO:K03781] [EC:1.11.1.6]
ROSMUCSMR3_04226  dhaa; 3-hydroxy-D-aspartate aldolase [KO:K18425] [EC:4.1.3.41]
ROSMUCSMR3_04227  psdht; phenylserine dehydratase [KO:K28180]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rmm00010  Glycolysis / Gluconeogenesis
rmm00020  Citrate cycle (TCA cycle)
rmm00030  Pentose phosphate pathway
rmm00053  Ascorbate and aldarate metabolism
rmm00071  Fatty acid degradation
rmm00230  Purine metabolism
rmm00250  Alanine, aspartate and glutamate metabolism
rmm00260  Glycine, serine and threonine metabolism
rmm00270  Cysteine and methionine metabolism
rmm00620  Pyruvate metabolism
rmm00710  Carbon fixation by Calvin cycle
rmm00750  Vitamin B6 metabolism
rmm00910  Nitrogen metabolism
KO pathway
ko00630   

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