KEGG   PATHWAY: rpu00020
Entry
rpu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ralstonia pseudosolanacearum RS 476
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpu00020  Citrate cycle (TCA cycle)
rpu00020

Module
rpu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rpu00020]
rpu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rpu00020]
rpu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rpu00020]
rpu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rpu00020]
rpu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rpu00020]
rpu_M00982  Methylcitrate cycle [PATH:rpu00020]
Other DBs
GO: 0006099
Organism
Ralstonia pseudosolanacearum RS 476 [GN:rpu]
Gene
CDC45_00090  [KO:K01596] [EC:4.1.1.32]
CDC45_02870  [KO:K01903] [EC:6.2.1.5]
CDC45_02875  [KO:K01902] [EC:6.2.1.5]
CDC45_06540  [KO:K00164] [EC:1.2.4.2]
CDC45_06545  [KO:K00658] [EC:2.3.1.61]
CDC45_06550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDC45_08240  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CDC45_08245  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CDC45_08255  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDC45_10015  [KO:K01676] [EC:4.2.1.2]
CDC45_10185  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CDC45_10195  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDC45_10200  [KO:K00239] [EC:1.3.5.1]
CDC45_10205  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CDC45_10210  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CDC45_10220  [KO:K00024] [EC:1.1.1.37]
CDC45_10245  acnA; aconitate hydratase [KO:K27802]
CDC45_12675  [KO:K00031] [EC:1.1.1.42]
CDC45_18190  [KO:K01659] [EC:2.3.3.5]
CDC45_19270  acnA; aconitate hydratase 1 [KO:K27802]
CDC45_19280  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CDC45_21680  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CDC45_24045  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CDC45_24495  [KO:K00164] [EC:1.2.4.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rpu00010  Glycolysis / Gluconeogenesis
rpu00053  Ascorbate and aldarate metabolism
rpu00061  Fatty acid biosynthesis
rpu00071  Fatty acid degradation
rpu00190  Oxidative phosphorylation
rpu00220  Arginine biosynthesis
rpu00250  Alanine, aspartate and glutamate metabolism
rpu00280  Valine, leucine and isoleucine degradation
rpu00350  Tyrosine metabolism
rpu00470  D-Amino acid metabolism
rpu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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