KEGG   PATHWAY: rtc00020
Entry
rtc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rathayibacter toxicus WAC3373
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rtc00020  Citrate cycle (TCA cycle)
rtc00020

Module
rtc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rtc00020]
rtc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rtc00020]
rtc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rtc00020]
rtc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rtc00020]
rtc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rtc00020]
Other DBs
GO: 0006099
Organism
Rathayibacter toxicus WAC3373 [GN:rtc]
Gene
APU90_08980  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
APU90_00180  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
APU90_03365  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
APU90_08600  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
APU90_00260  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
APU90_05990  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
APU90_03390  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
APU90_03395  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
APU90_08050  fumarate reductase [KO:K00239] [EC:1.3.5.1]
APU90_08045  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
APU90_08060  succinate dehydrogenase [KO:K00241]
APU90_08055  succinate dehydrogenase [KO:K00242]
APU90_08790  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
APU90_07630  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
APU90_07975  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
APU90_01065  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
APU90_00265  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rtc00010  Glycolysis / Gluconeogenesis
rtc00053  Ascorbate and aldarate metabolism
rtc00061  Fatty acid biosynthesis
rtc00071  Fatty acid degradation
rtc00190  Oxidative phosphorylation
rtc00220  Arginine biosynthesis
rtc00250  Alanine, aspartate and glutamate metabolism
rtc00280  Valine, leucine and isoleucine degradation
rtc00350  Tyrosine metabolism
rtc00470  D-Amino acid metabolism
rtc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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