KEGG   PATHWAY: sdur00020
Entry
sdur00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces durmitorensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdur00020  Citrate cycle (TCA cycle)
sdur00020

Module
sdur_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sdur00020]
sdur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sdur00020]
sdur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sdur00020]
sdur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sdur00020]
sdur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sdur00020]
Other DBs
GO: 0006099
Organism
Streptomyces durmitorensis [GN:sdur]
Gene
M4V62_12250  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
M4V62_12255  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
M4V62_23930  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
M4V62_27140  citrate synthase [KO:K01647] [EC:2.3.3.1]
M4V62_11590  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
M4V62_37895  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M4V62_15175  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
M4V62_03855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M4V62_30170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M4V62_18610  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M4V62_18615  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M4V62_08550  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M4V62_17830  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M4V62_08555  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M4V62_17835  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M4V62_05540  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M4V62_16145  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M4V62_17470  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M4V62_05535  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M4V62_16150  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M4V62_17475  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M4V62_05545  succinate dehydrogenase [KO:K00241]
M4V62_17460  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M4V62_17465  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
M4V62_16555  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M4V62_16565  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M4V62_17750  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M4V62_16835  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
M4V62_28980  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
M4V62_30155  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
M4V62_30165  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
M4V62_31455  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sdur00010  Glycolysis / Gluconeogenesis
sdur00053  Ascorbate and aldarate metabolism
sdur00061  Fatty acid biosynthesis
sdur00071  Fatty acid degradation
sdur00190  Oxidative phosphorylation
sdur00220  Arginine biosynthesis
sdur00250  Alanine, aspartate and glutamate metabolism
sdur00280  Valine, leucine and isoleucine degradation
sdur00350  Tyrosine metabolism
sdur00470  D-Amino acid metabolism
sdur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system