KEGG   PATHWAY: sega00020
Entry
sega00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sega00020  Citrate cycle (TCA cycle)
sega00020

Module
sega_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sega00020]
sega_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sega00020]
sega_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sega00020]
sega_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sega00020]
sega_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sega00020]
sega_M00982  Methylcitrate cycle [PATH:sega00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67 [GN:sega]
Gene
SPUCDC_0164  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SPUCDC_0165  aceF; dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
SPUCDC_0166  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SPUCDC_0171  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SPUCDC_1042  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SPUCDC_1205  [KO:K01675]
SPUCDC_1282  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
SPUCDC_1283  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SPUCDC_1467  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SPUCDC_1523  acnA; aconitate hydratase 1 [KO:K27802]
SPUCDC_2200  [KO:K01677] [EC:4.2.1.2]
SPUCDC_2201  [KO:K01678] [EC:4.2.1.2]
SPUCDC_2222  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SPUCDC_2223  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SPUCDC_2224  sucB; dihydrolipoamide succinyltransferase component [KO:K00658] [EC:2.3.1.61]
SPUCDC_2225  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SPUCDC_2226  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SPUCDC_2227  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SPUCDC_2228  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
SPUCDC_2229  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SPUCDC_2230  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SPUCDC_2590  prpC; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SPUCDC_3355  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SPUCDC_4066  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SPUCDC_4278  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SPUCDC_4319  frdD; fumarate reductase complex subunit D, membrane anchor polypeptide [KO:K00247]
SPUCDC_4320  frdC; fumarate reductase complex subunit C, membrane anchor polypeptide [KO:K00246]
SPUCDC_4321  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SPUCDC_4322  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sega00010  Glycolysis / Gluconeogenesis
sega00053  Ascorbate and aldarate metabolism
sega00061  Fatty acid biosynthesis
sega00071  Fatty acid degradation
sega00190  Oxidative phosphorylation
sega00220  Arginine biosynthesis
sega00250  Alanine, aspartate and glutamate metabolism
sega00280  Valine, leucine and isoleucine degradation
sega00350  Tyrosine metabolism
sega00470  D-Amino acid metabolism
sega00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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