KEGG   PATHWAY: sey00020
Entry
sey00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhimurium SL1344
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sey00020  Citrate cycle (TCA cycle)
sey00020

Module
sey_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sey00020]
sey_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sey00020]
sey_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sey00020]
sey_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sey00020]
sey_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sey00020]
sey_M00982  Methylcitrate cycle [PATH:sey00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhimurium SL1344 [GN:sey]
Gene
SL1344_0152  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SL1344_0153  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
SL1344_0154  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SL1344_0159  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SL1344_0364  prpC; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SL1344_0712  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SL1344_0714  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SL1344_0715  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
SL1344_0716  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SL1344_0717  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SL1344_0718  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SL1344_0719  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
SL1344_0720  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SL1344_0721  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SL1344_0738  [KO:K01678] [EC:4.2.1.2]
SL1344_0739  [KO:K01677] [EC:4.2.1.2]
SL1344_1176  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SL1344_1322  orf70; conserved hypothetical protein [KO:K01675]
SL1344_1398  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
SL1344_1400  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SL1344_1581  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SL1344_1644  acnA; aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K27802]
SL1344_3331  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SL1344_3467  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SL1344_4237  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SL1344_4277  frdD; fumarate reductase complex subunit D; membrane anchor polypeptide [KO:K00247]
SL1344_4278  frdC; fumarate reductase complex subunit C; membrane anchor polypeptide [KO:K00246]
SL1344_4279  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SL1344_4280  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sey00010  Glycolysis / Gluconeogenesis
sey00053  Ascorbate and aldarate metabolism
sey00061  Fatty acid biosynthesis
sey00071  Fatty acid degradation
sey00190  Oxidative phosphorylation
sey00220  Arginine biosynthesis
sey00250  Alanine, aspartate and glutamate metabolism
sey00280  Valine, leucine and isoleucine degradation
sey00350  Tyrosine metabolism
sey00470  D-Amino acid metabolism
sey00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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