KEGG   PATHWAY: sgf00020
Entry
sgf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces griseofuscus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgf00020  Citrate cycle (TCA cycle)
sgf00020

Module
sgf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgf00020]
sgf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgf00020]
sgf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgf00020]
sgf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgf00020]
sgf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgf00020]
sgf_M00982  Methylcitrate cycle [PATH:sgf00020]
Other DBs
GO: 0006099
Organism
Streptomyces griseofuscus [GN:sgf]
Gene
HEP81_00427  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HEP81_00432  [KO:K01647] [EC:2.3.3.1]
HEP81_00572  [KO:K01958] [EC:6.4.1.1]
HEP81_00877  [KO:K00240] [EC:1.3.5.1]
HEP81_00878  [KO:K00239] [EC:1.3.5.1]
HEP81_00879  [KO:K00241]
HEP81_00980  [KO:K01659] [EC:2.3.3.5]
HEP81_01017  [KO:K00031] [EC:1.1.1.42]
HEP81_01684  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEP81_01909  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEP81_01981  acnA; aconitate hydratase AcnA [KO:K27802]
HEP81_02212  [KO:K01647] [EC:2.3.3.1]
HEP81_02213  [KO:K01647] [EC:2.3.3.1]
HEP81_02754  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HEP81_02925  [KO:K00239] [EC:1.3.5.1]
HEP81_02926  [KO:K00240] [EC:1.3.5.1]
HEP81_02957  [KO:K01676] [EC:4.2.1.2]
HEP81_02958  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HEP81_03009  [KO:K01596] [EC:4.1.1.32]
HEP81_03106  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HEP81_03107  [KO:K00242]
HEP81_03108  [KO:K00239] [EC:1.3.5.1]
HEP81_03109  [KO:K00240] [EC:1.3.5.1]
HEP81_03136  [KO:K00024] [EC:1.1.1.37]
HEP81_03150  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HEP81_03151  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
HEP81_03328  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HEP81_03329  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HEP81_03580  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HEP81_03581  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HEP81_04313  [KO:K01647] [EC:2.3.3.1]
HEP81_05063  [KO:K01647] [EC:2.3.3.1]
HEP81_05372  aceE_1; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HEP81_05587  aceE_2; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HEP81_05589  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
HEP81_05590  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgf00010  Glycolysis / Gluconeogenesis
sgf00053  Ascorbate and aldarate metabolism
sgf00061  Fatty acid biosynthesis
sgf00071  Fatty acid degradation
sgf00190  Oxidative phosphorylation
sgf00220  Arginine biosynthesis
sgf00250  Alanine, aspartate and glutamate metabolism
sgf00280  Valine, leucine and isoleucine degradation
sgf00350  Tyrosine metabolism
sgf00470  D-Amino acid metabolism
sgf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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