KEGG   PATHWAY: snq00020
Entry
snq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces nodosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
snq00020  Citrate cycle (TCA cycle)
snq00020

Module
snq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:snq00020]
snq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:snq00020]
snq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:snq00020]
snq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:snq00020]
snq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:snq00020]
Other DBs
GO: 0006099
Organism
Streptomyces nodosus [GN:snq]
Gene
CP978_12720  citrate synthase [KO:K01647] [EC:2.3.3.1]
CP978_15330  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
CP978_34030  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CP978_25960  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CP978_05610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CP978_22755  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CP978_10515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CP978_19715  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CP978_19710  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CP978_20595  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CP978_20590  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CP978_05265  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP978_20775  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP978_05260  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP978_20770  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP978_05270  succinate dehydrogenase [KO:K00241]
CP978_20785  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CP978_20780  succinate dehydrogenase [KO:K00242]
CP978_21670  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CP978_21665  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CP978_28225  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CP978_20645  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CP978_27335  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CP978_21415  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CP978_10530  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP978_11425  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP978_10520  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
snq00010  Glycolysis / Gluconeogenesis
snq00053  Ascorbate and aldarate metabolism
snq00061  Fatty acid biosynthesis
snq00071  Fatty acid degradation
snq00190  Oxidative phosphorylation
snq00220  Arginine biosynthesis
snq00250  Alanine, aspartate and glutamate metabolism
snq00280  Valine, leucine and isoleucine degradation
snq00350  Tyrosine metabolism
snq00470  D-Amino acid metabolism
snq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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