KEGG   PATHWAY: sroe00020
Entry
sroe00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Skermanella rosea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sroe00020  Citrate cycle (TCA cycle)
sroe00020

Module
sroe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sroe00020]
sroe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sroe00020]
sroe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sroe00020]
sroe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sroe00020]
sroe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sroe00020]
Other DBs
GO: 0006099
Organism
Skermanella rosea [GN:sroe]
Gene
JL101_010835  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JL101_002705  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JL101_002700  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JL101_002320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JL101_001500  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JL101_001505  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JL101_001530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JL101_012305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JL101_001495  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JL101_030485  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JL101_001490  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JL101_030480  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JL101_014465  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JL101_014470  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JL101_014455  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JL101_014460  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JL101_033970  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JL101_019385  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JL101_001485  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JL101_024450  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JL101_025080  transketolase [KO:K00163] [EC:1.2.4.1]
JL101_012290  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JL101_012295  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JL101_012300  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
JL101_013680  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
JL101_026535  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sroe00010  Glycolysis / Gluconeogenesis
sroe00053  Ascorbate and aldarate metabolism
sroe00061  Fatty acid biosynthesis
sroe00071  Fatty acid degradation
sroe00190  Oxidative phosphorylation
sroe00220  Arginine biosynthesis
sroe00250  Alanine, aspartate and glutamate metabolism
sroe00280  Valine, leucine and isoleucine degradation
sroe00350  Tyrosine metabolism
sroe00470  D-Amino acid metabolism
sroe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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